Allen Institute for Neural Dynamics
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aind-data-schema
aind-data-schema PublicA library that defines AIND data schema and validates JSON.
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aind-ephys-pipeline
aind-ephys-pipeline PublicAIND pipeline for processing extracellular electrophysiology data
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openscope-community-predictive-processing
openscope-community-predictive-processing PublicThis repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.
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aind-ephys-spikesort-kilosort25-full
aind-ephys-spikesort-kilosort25-full PublicCodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.
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segmentation-skeleton-metrics
segmentation-skeleton-metrics PublicA Python package for evaluating the topological accuracy of a neuron segmentation by computing skeleton-based metrics.
Python 8
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ibl-ephys-alignment-gui
ibl-ephys-alignment-gui PublicForked from int-brain-lab/iblapps
Tool for aligning electrophysiological features to anatomical landmarks
Repositories
- nmcp-client Public
AllenNeuralDynamics/nmcp-client’s past year of commit activity - nmcp-api Public
AllenNeuralDynamics/nmcp-api’s past year of commit activity - aind-dynamic-foraging-basic-analysis Public
compute behavioral metrics and generate basic plottings for the dynamic foraging task
AllenNeuralDynamics/aind-dynamic-foraging-basic-analysis’s past year of commit activity - aind-ephys-cleanup Public
Tools for finding compressed raw ephys data uploaded to S3 corresponding to the original, uncompressed raw data files stored locally or on network drives, for checking the integrity of the uploaded data, and for identifying original files that can be safely deleted.
AllenNeuralDynamics/aind-ephys-cleanup’s past year of commit activity - aind-exaspim-neuron-segmentation Public
A Python package for performing neuron segmentation in large-scale image datasets.
AllenNeuralDynamics/aind-exaspim-neuron-segmentation’s past year of commit activity
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