Add AIVariant tumor-normal caller with chromosome chunking #5

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iamh2o wants to merge 2 commits into main from codex/add-snakemake-rule-for-aivariant

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iamh2o commented Aug 18, 2025

Summary

add AIVariant SNV caller rules to process tumor-normal pairs
configure AIVariant parameters in local and slurm profiles
track tumor-normal pairs in rule_common and expose chromosome chunks

Testing

snakemake --lint (fails: command not found)
pytest

https://chatgpt.com/codex/tasks/task_e_68a2db7ec2f083319644519f7e8c8e42


          Add AIVariant tumor-normal SNV caller

36e4e4f

iamh2o added the codex label

— with

ChatGPT Codex Connector


          use paired sample match column

7ec70be

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