Skip to content

[Bug]: nwbwidgets incompatible with pynwb #321

Description

@kfouke1

What happened?

I cannot get nwbwidgets to work with pynwb (version 3.0). I installed pynwb first, and then installed nwbwidgets, both using pip. This is the import error that I am getting:

Image

Steps to Reproduce

No response

Traceback

Operating System

Windows

Python Version

3.10

Package Versions

aiohappyeyeballs==2.6.1
aiohttp==3.11.16
aiosignal==1.3.2
annotated-types==0.7.0
anyio==4.9.0
argon2-cffi==23.1.0
argon2-cffi-bindings==21.2.0
arrow==1.3.0
asciitree==0.3.3
asttokens==3.0.0
async-lru==2.0.5
async-timeout==5.0.1
attrs==25.3.0
babel==2.17.0
backports.tarfile==1.2.0
beautifulsoup4==4.13.4
bidsschematools==1.0.5
bleach==6.2.0
bqplot==0.12.44
certifi==2025.1.31
cffi==1.17.1
charset-normalizer==3.4.1
ci-info==0.3.0
click==8.1.8
click-didyoumean==0.3.1
colorama==0.4.6
comm==0.2.2
contourpy==1.3.2
cycler==0.12.1
dandi==0.67.3
dandischema==0.11.0
debugpy==1.8.14
decorator==5.2.1
defusedxml==0.7.1
dnspython==2.7.0
email_validator==2.2.0
etelemetry==0.3.1
exceptiongroup==1.2.2
executing==2.2.0
fasteners==0.19
fastjsonschema==2.21.1
fonttools==4.57.0
fqdn==1.5.1
frozenlist==1.6.0
fscacher==0.4.4
fsspec==2025.3.2
gast==0.4.0
h11==0.14.0
h5py==3.13.0
hdmf==4.0.0
hdmf_zarr==0.11.1
httpcore==1.0.8
httpx==0.28.1
humanize==4.12.2
idna==3.10
imageio==2.37.0
importlib-metadata==4.13.0
interleave==0.3.0
ipydatagrid==1.4.0
ipydatawidgets==4.3.2
ipyfilechooser==0.6.0
ipykernel==6.29.5
ipympl==0.9.7
ipython==8.35.0
ipyvolume==0.6.3
ipyvue==1.11.2
ipyvuetify==1.11.1
ipywebrtc==0.6.0
ipywidgets==8.1.6
isodate==0.7.2
isoduration==20.11.0
jaraco.classes==3.4.0
jaraco.context==6.0.1
jaraco.functools==4.1.0
jedi==0.19.2
Jinja2==3.1.6
joblib==1.4.2
json5==0.12.0
jsonpointer==3.0.0
jsonschema==4.23.0
jsonschema-specifications==2024.10.1
jupyter==1.1.1
jupyter-console==6.6.3
jupyter-events==0.12.0
jupyter-lsp==2.2.5
jupyter_client==8.6.3
jupyter_core==5.7.2
jupyter_server==2.15.0
jupyter_server_terminals==0.5.3
jupyterlab==4.4.0
jupyterlab_pygments==0.3.0
jupyterlab_server==2.27.3
jupyterlab_widgets==3.0.14
keyring==25.6.0
keyrings.alt==5.0.2
kiwisolver==1.4.8
lazy_loader==0.4
MarkupSafe==3.0.2
matplotlib==3.10.1
matplotlib-inline==0.1.7
mistune==3.1.3
more-itertools==10.6.0
multidict==6.4.3
natsort==8.4.0
nbclient==0.10.2
nbconvert==7.16.6
nbformat==5.10.4
ndx-grayscalevolume==0.0.2
ndx-icephys-meta==0.1.0
ndx-spectrum==0.2.2
nest-asyncio==1.6.0
networkx==3.4.2
notebook==7.4.0
notebook_shim==0.2.4
numcodecs==0.13.1
numpy==2.2.4
nwbinspector==0.6.3
nwbwidgets==0.11.3
overrides==7.7.0
packaging==24.2
pandas==2.2.3
pandocfilters==1.5.1
parso==0.8.4
pillow==11.2.1
platformdirs==4.3.7
plotly==5.13.1
prometheus_client==0.21.1
prompt_toolkit==3.0.51
propcache==0.3.1
psutil==7.0.0
pure_eval==0.2.3
py2vega==0.6.1
pycparser==2.22
pycryptodomex==3.22.0
pydantic==2.11.3
pydantic_core==2.33.1
Pygments==2.19.1
pynwb==3.0.0
pyout==0.8.1
pyparsing==3.2.3
python-dateutil==2.9.0.post0
python-json-logger==3.3.0
pythreejs==2.4.2
pytz==2025.2
pywin32==310
pywin32-ctypes==0.2.3
pywinpty==2.0.15
PyYAML==6.0.2
pyzmq==26.4.0
referencing==0.36.2
requests==2.32.3
rfc3339-validator==0.1.4
rfc3986-validator==0.1.1
rfc3987==1.3.8
rpds-py==0.24.0
ruamel.yaml==0.18.10
ruamel.yaml.clib==0.2.12
scikit-image==0.25.2
scipy==1.15.2
semantic-version==2.10.0
Send2Trash==1.8.3
SimpleITK-SimpleElastix==2.0.0rc2.dev910
six==1.17.0
sniffio==1.3.1
soupsieve==2.6
stack-data==0.6.3
tenacity==9.1.2
terminado==0.18.1
threadpoolctl==3.6.0
tifffile==2025.3.30
tinycss2==1.4.0
tomli==2.2.1
tornado==6.4.2
tqdm==4.67.1
traitlets==5.14.3
traittypes==0.2.1
trimesh==4.6.8
types-python-dateutil==2.9.0.20241206
typing-inspection==0.4.0
typing_extensions==4.13.2
tzdata==2025.2
uri-template==1.3.0
urllib3==2.4.0
wcwidth==0.2.13
webcolors==24.11.1
webencodings==0.5.1
websocket-client==1.8.0
widgetsnbextension==4.0.14
yarl==1.20.0
zarr==2.18.3
zarr-checksum==0.4.7
zipp==3.21.0

Code of Conduct

Activity

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Metadata

Metadata

Assignees

No one assigned

    Labels

    bugSomething isn't working

    Type

    No type

    Projects

    No projects

      Milestone

      No milestone

      Relationships

      None yet

      Development

      No branches or pull requests

      Issue actions