MISB training 2024

Running the notebooks locally

Installing dependencies

An easy way is to create a conda environment. Install it using environment.yaml, and then activate it:

conda env create -f environment.yml
conda activate misb

Alternatively, requirements can be installed with pip, using requirements.txt:

pip install -r requirements.txt

Launching Jupyter Lab

Once the dependencies are installed, open the notebooks (.ipynb files) with Jupyter Lab after running the following on the command line:

jupyter lab

Running the notebooks on a web browser

It's also possible to use Binder to run the notebooks on your web browser. Click here or the "launch binder" button at the top!