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Copy States Optimization #297

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94fbfb9
slurm script
Jun 18, 2025
5339204
draft benchmarking scripts
Jun 30, 2025
9604bae
reduce duplicated message
Angeladadd Jul 16, 2025
16435ed
update viz
Angeladadd Jul 17, 2025
df21e0e
add measurement of overall execution time & pass flag whether to dedu…
Angeladadd Jul 17, 2025
42133cc
add slurm script
Jul 17, 2025
d768e56
local copy/remote duplicate in parallel
Jul 24, 2025
622fe22
optimize indices
Jul 31, 2025
d80974c
stage viz
Angeladadd Jul 31, 2025
b14678d
draft optimized indices
Angeladadd Jul 31, 2025
6860148
add optimized resample flag to test
Angeladadd Aug 13, 2025
79da49c
update test scripts
Aug 13, 2025
66ed782
update viz
Angeladadd Aug 14, 2025
9b350da
update test script
Aug 17, 2025
f44bed9
update viz
Angeladadd Aug 17, 2025
1820978
update timer naming
Angeladadd Aug 19, 2025
596832d
update code
Sep 1, 2025
ac1a126
update viz
Angeladadd Sep 1, 2025
87e287b
remove serialization
Angeladadd Sep 1, 2025
d2d3df9
upgrade julia
Angeladadd Sep 1, 2025
883045e
add TimerOutput
Angeladadd Sep 1, 2025
2d2d33d
remove unused files
Sep 1, 2025
54f77aa
Bump actions/checkout from 4 to 5 (#298)
dependabot[bot] Sep 1, 2025
2b10cee
update benchmark deps
Angeladadd Sep 1, 2025
019bbf0
Revert "update benchmark deps"
Angeladadd Sep 3, 2025
a1c9ff8
downgrade julia
Angeladadd Sep 3, 2025
273cde9
downgrade to 1.7
Angeladadd Sep 3, 2025
879553f
fix ci
Angeladadd Sep 3, 2025
78270ca
add Test
Angeladadd Sep 3, 2025
d397e69
fix benchmark
Angeladadd Sep 3, 2025
687bd42
upgrade benchmark julia to 1.10
Angeladadd Sep 3, 2025
12a6972
fix test depts
Angeladadd Sep 3, 2025
6f4dbfb
Merge branch 'main' into cgsun/copy_states_refine
Angeladadd Sep 4, 2025
49d3eae
add tests
Angeladadd Sep 4, 2025
eed0ac0
reduce modified files and update viz
Angeladadd Sep 4, 2025
1b9be26
update gitignore
Angeladadd Sep 4, 2025
41e74ef
update scripts
Sep 4, 2025
ed4267d
use filter paramter
Angeladadd Sep 4, 2025
7e2c788
update extra
Sep 4, 2025
334d597
add comments
Angeladadd Sep 4, 2025
2d45aa9
remove serialization pkg
Angeladadd Sep 4, 2025
95b8e5e
update comment
Angeladadd Sep 4, 2025
e475640
fix comments
Angeladadd Sep 4, 2025
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3 changes: 3 additions & 0 deletions Project.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -5,14 +5,17 @@ version = "1.2.0"

[deps]
ChunkSplitters = "ae650224-84b6-46f8-82ea-d812ca08434e"
ExactOptimalTransport = "24df6009-d856-477c-ac5c-91f668376b31"
HDF5 = "f67ccb44-e63f-5c2f-98bd-6dc0ccc4ba2f"
HiGHS = "87dc4568-4c63-4d18-b0c0-bb2238e4078b"
LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195"
OpenMPI_jll = "fe0851c0-eecd-5654-98d4-656369965a5c"
PDMats = "90014a1f-27ba-587c-ab20-58faa44d9150"
Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a"
SuiteSparse_jll = "bea87d4a-7f5b-5778-9afe-8cc45184846c"
Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
TimerOutputs = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f"
YAML = "ddb6d928-2868-570f-bddf-ab3f9cf99eb6"
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