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@Baschdl Baschdl commented Dec 13, 2023

This PR currently just adds two tests, one were running tl.cell_velocities works and one were selecting for transition_genes fails. From trying to debug it, I would say that there is some unintended interplay of dynamics_genes and transition_genes which results in incompatible array shapes in different places.

Furthermore, the documentation of transition_matrix in tl.cell_velocities seems to be off.

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