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Ttena 279 - transl_except attribute value correction - #155

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TTENA-279-translexcept-fix
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Ttena 279 - transl_except attribute value correction#155
IvaTutis wants to merge 10 commits into
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TTENA-279-translexcept-fix

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@IvaTutis IvaTutis commented Aug 4, 2026

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Adds the equivalent of Transl_exceptLocationFix.java from sequencetools into gff3tools.

The additional strand-complement validation makes sense (no complement on non-minus strand in column 7) - verified with bioinformaticians, see gff3 clarifications table.

Relevant as this fix and checks need to execute prior to translation, and transl_except is used there.

@IvaTutis
IvaTutis requested a review from lognath-ebi August 4, 2026 14:54
@IvaTutis IvaTutis changed the title Ttena 279 translexcept fix Ttena 279 - transl_except attribute value correction Aug 4, 2026
@IvaTutis
IvaTutis requested a review from Rajkumar-D August 7, 2026 16:39
…TTENA-279-translexcept-fix

merged-main-into-feature-branch
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