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Fix outdated library dependencies #5

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Fix outdated library dependencies #5

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bd70f0a
Fix tensorflow error
tuyenhn Sep 19, 2023
9379e7f
fix pandas deprecated function
tuyenhn Sep 29, 2023
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4 changes: 2 additions & 2 deletions phylodeep/ci_comput.py
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Original file line number Diff line number Diff line change
Expand Up @@ -259,8 +259,8 @@ def ci_comp(pred_vals, model, resc_factor, nb_tips, tr_size, samp_proba, vector_
# add ci values to the output table
ci_2_5 = pd.DataFrame(data=[ci_2_5], columns=PREDICTED_NAMES[model], index=[CI_2_5])
ci_97_5 = pd.DataFrame(data=[ci_97_5], columns=PREDICTED_NAMES[model], index=[CI_97_5])
pred_vals = pred_vals.append(ci_2_5, ignore_index=True)
pred_vals = pred_vals.append(ci_97_5, ignore_index=True)
pred_vals = pd.concat([pred_vals, ci_2_5], ignore_index=True)
pred_vals = pd.concat([pred_vals, ci_97_5], ignore_index=True)
pred_vals.index = [PREDICTED_VALUE, CI_2_5, CI_97_5]

return pred_vals
2 changes: 1 addition & 1 deletion phylodeep/model_load.py
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Expand Up @@ -8,7 +8,7 @@
warnings.filterwarnings('ignore')
os.environ['TF_CPP_MIN_LOG_LEVEL'] = '2'

from tensorflow.python.keras.models import model_from_json
from tensorflow.keras.models import model_from_json


PRETRAINED_MODELS_DIR = os.path.join(os.path.abspath(os.path.dirname(__file__)), 'pretrained_models')
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