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[7269] bulk export history fails with client-assigned string IDs #7300

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Merged
merged 22 commits into from
Nov 3, 2025
Merged

[7269] bulk export history fails with client-assigned string IDs #7300

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8ac8f54
fixed 7269 bulk export history failure with client-assigned string IDs
rob-caruso Oct 14, 2025
5058bd5
fixed 7269 bulk export history failure with client-assigned string IDs
rob-caruso Oct 15, 2025
d4b7b70
Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/8…
robcaruso Oct 15, 2025
f467a90
changed string ids to IResourcePersistentId
rob-caruso Oct 21, 2025
593acd2
Merge branch 'master' into rc-20251010-bulk-export-fails-with-string-…
rob-caruso Oct 21, 2025
06af86a
changed string ids to IResourcePersistentId
rob-caruso Oct 23, 2025
be08680
batch2 jobs that are cancelled will not be returned when requesting a…
TipzCM Oct 23, 2025
40f1128
Bump to 8 7 (#7322)
jdar8 Oct 24, 2025
5d32bb2
Merge branch 'master' into rc-20251010-bulk-export-fails-with-string-…
rob-caruso Oct 24, 2025
3e105cd
Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/ind…
robcaruso Oct 24, 2025
e6e97bc
fixed with spotless
rob-caruso Oct 24, 2025
df6df74
Merge remote-tracking branch 'origin/rel_8_6' into rc-20251010-bulk-e…
rob-caruso Oct 24, 2025
afcbb31
Revert "Bump to 8 7 (#7322)"
rob-caruso Oct 24, 2025
7b6a9e2
Revert "changed string ids to IResourcePersistentId"
rob-caruso Oct 24, 2025
e450613
Revert "batch2 jobs that are cancelled will not be returned when requ…
rob-caruso Oct 24, 2025
0980f08
changed string ids to IResourcePersistentId
rob-caruso Oct 24, 2025
df090b1
fixed with spotless
rob-caruso Oct 24, 2025
41019f6
Bumped version number
rob-caruso Oct 24, 2025
e35e69d
Merge branch 'rel_8_6' into rc-20251010-bulk-export-fails-with-string…
robcaruso Oct 27, 2025
b439442
Merge branch 'rel_8_6' into rc-20251010-bulk-export-fails-with-string…
robcaruso Oct 27, 2025
934765c
adding missing change to fix build
rob-caruso Oct 28, 2025
b696117
Merge branch 'rel_8_6' into rc-20251010-bulk-export-fails-with-string…
robcaruso Oct 31, 2025
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2 changes: 1 addition & 1 deletion hapi-deployable-pom/pom.xml
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<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>8.5.8-SNAPSHOT</version>
<version>8.5.9-SNAPSHOT</version>

<relativePath>../pom.xml</relativePath>
</parent>
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2 changes: 1 addition & 1 deletion hapi-fhir-android/pom.xml
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<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>8.5.8-SNAPSHOT</version>
<version>8.5.9-SNAPSHOT</version>

<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>
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2 changes: 1 addition & 1 deletion hapi-fhir-base/pom.xml
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<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>8.5.8-SNAPSHOT</version>
<version>8.5.9-SNAPSHOT</version>

<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>
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4 changes: 2 additions & 2 deletions hapi-fhir-bom/pom.xml
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Expand Up @@ -4,15 +4,15 @@
<modelVersion>4.0.0</modelVersion>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-bom</artifactId>
<version>8.5.8-SNAPSHOT</version>
<version>8.5.9-SNAPSHOT</version>

<packaging>pom</packaging>
<name>HAPI FHIR BOM</name>

<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>8.5.8-SNAPSHOT</version>
<version>8.5.9-SNAPSHOT</version>

<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>
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2 changes: 1 addition & 1 deletion hapi-fhir-checkstyle/pom.xml
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<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>8.5.8-SNAPSHOT</version>
<version>8.5.9-SNAPSHOT</version>

<relativePath>../pom.xml</relativePath>
</parent>
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2 changes: 1 addition & 1 deletion hapi-fhir-cli/hapi-fhir-cli-api/pom.xml
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<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>8.5.8-SNAPSHOT</version>
<version>8.5.9-SNAPSHOT</version>

<relativePath>../../hapi-deployable-pom/pom.xml</relativePath>
</parent>
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2 changes: 1 addition & 1 deletion hapi-fhir-cli/hapi-fhir-cli-app/pom.xml
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<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-cli</artifactId>
<version>8.5.8-SNAPSHOT</version>
<version>8.5.9-SNAPSHOT</version>

<relativePath>../pom.xml</relativePath>
</parent>
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2 changes: 1 addition & 1 deletion hapi-fhir-cli/pom.xml
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<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>8.5.8-SNAPSHOT</version>
<version>8.5.9-SNAPSHOT</version>

<relativePath>../pom.xml</relativePath>
</parent>
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2 changes: 1 addition & 1 deletion hapi-fhir-client-apache-http5/pom.xml
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<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>8.5.8-SNAPSHOT</version>
<version>8.5.9-SNAPSHOT</version>

<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>
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2 changes: 1 addition & 1 deletion hapi-fhir-client-okhttp/pom.xml
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<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>8.5.8-SNAPSHOT</version>
<version>8.5.9-SNAPSHOT</version>

<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>
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2 changes: 1 addition & 1 deletion hapi-fhir-client/pom.xml
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<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>8.5.8-SNAPSHOT</version>
<version>8.5.9-SNAPSHOT</version>

<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>
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2 changes: 1 addition & 1 deletion hapi-fhir-converter/pom.xml
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<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>8.5.8-SNAPSHOT</version>
<version>8.5.9-SNAPSHOT</version>

<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>
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2 changes: 1 addition & 1 deletion hapi-fhir-dist/pom.xml
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<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>8.5.8-SNAPSHOT</version>
<version>8.5.9-SNAPSHOT</version>

<relativePath>../pom.xml</relativePath>
</parent>
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2 changes: 1 addition & 1 deletion hapi-fhir-docs/pom.xml
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<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>8.5.8-SNAPSHOT</version>
<version>8.5.9-SNAPSHOT</version>

<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>
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5 changes: 5 additions & 0 deletions ...ces/ca/uhn/hapi/fhir/changelog/8_6_0/7296-bulk-export-fails-with-string-resource-ids.yaml
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@@ -0,0 +1,5 @@
---
type: fix
issue: 7296
title: "Fixed an issue in bulk export with _includeHistory=true where history records failed to export for resources with client-assigned string IDs. History
is now gathered using PIDs rather than forced IDs."
2 changes: 1 addition & 1 deletion hapi-fhir-jacoco/pom.xml
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Expand Up @@ -11,7 +11,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>8.5.8-SNAPSHOT</version>
<version>8.5.9-SNAPSHOT</version>

<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>
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2 changes: 1 addition & 1 deletion hapi-fhir-jaxrsserver-base/pom.xml
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<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>8.5.8-SNAPSHOT</version>
<version>8.5.9-SNAPSHOT</version>

<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>
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2 changes: 1 addition & 1 deletion hapi-fhir-jpa-hibernate-services/pom.xml
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<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>8.5.8-SNAPSHOT</version>
<version>8.5.9-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

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2 changes: 1 addition & 1 deletion hapi-fhir-jpa/pom.xml
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<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>8.5.8-SNAPSHOT</version>
<version>8.5.9-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>
<modelVersion>4.0.0</modelVersion>
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2 changes: 1 addition & 1 deletion hapi-fhir-jpaserver-base/pom.xml
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Expand Up @@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>8.5.8-SNAPSHOT</version>
<version>8.5.9-SNAPSHOT</version>

<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>
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4 changes: 2 additions & 2 deletions hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/config/JpaConfig.java
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Expand Up @@ -706,7 +706,7 @@ public PersistedJpaSearchFirstPageBundleProvider newPersistedJpaSearchFirstPageB
@Scope("prototype")
public PersistedJpaIdSearchBundleProvider newPersistedJpaIdSearchBundleProvider(
String theResourceType,
List<String> theResourceIds,
List<IResourcePersistentId<?>> theResourceIds,
RequestPartitionId thePartitionId,
@Nullable Date theRangeStartInclusive,
@Nonnull Date theRangeEndInclusive) {
Expand Down Expand Up @@ -849,7 +849,7 @@ public HistoryBuilder newHistoryBuilder(
@Scope("prototype")
public HistoryBuilder newHistoryBuilderWithIds(
@Nonnull String theResourceType,
@Nonnull List<String> theResourceIds,
@Nonnull List<IResourcePersistentId<?>> theResourceIds,
@Nullable Date theRangeStartInclusive,
@Nonnull Date theRangeEndInclusive) {
return new HistoryBuilder(theResourceType, theResourceIds, theRangeStartInclusive, theRangeEndInclusive);
Expand Down
12 changes: 5 additions & 7 deletions hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/HistoryBuilder.java
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Expand Up @@ -28,7 +28,7 @@
import ca.uhn.fhir.jpa.model.config.PartitionSettings;
import ca.uhn.fhir.jpa.model.dao.JpaPid;
import ca.uhn.fhir.jpa.model.entity.ResourceHistoryTable;
import ca.uhn.fhir.model.primitive.IdDt;
import ca.uhn.fhir.rest.api.server.storage.IResourcePersistentId;
import ca.uhn.fhir.rest.param.HistorySearchStyleEnum;
import ca.uhn.fhir.rest.server.exceptions.InvalidRequestException;
import com.google.common.collect.ImmutableListMultimap;
Expand Down Expand Up @@ -69,7 +69,7 @@ public class HistoryBuilder {
private static final Logger ourLog = LoggerFactory.getLogger(HistoryBuilder.class);
private final String myResourceType;
private final JpaPid myResourceId;
private final List<String> myResourceIds;
private final List<IResourcePersistentId<?>> myResourceIds;
private final Date myRangeStartInclusive;
private final Date myRangeEndInclusive;

Expand Down Expand Up @@ -108,7 +108,7 @@ public HistoryBuilder(
*/
public HistoryBuilder(
@Nonnull String theResourceType,
@Nonnull List<String> theResourceIds,
@Nonnull List<IResourcePersistentId<?>> theResourceIds,
@Nullable Date theRangeStartInclusive,
@Nonnull Date theRangeEndInclusive) {
myResourceType = theResourceType;
Expand Down Expand Up @@ -275,14 +275,12 @@ private void addPredicatesToQuery(
}

private void addResourceIdsFiltering(
@Nonnull List<String> theResourceIds,
@Nonnull List<IResourcePersistentId<?>> theResourceIds,
RequestPartitionId thePartitionId,
Root<ResourceHistoryTable> theFrom,
List<Predicate> predicates) {

List<Long> ids = theResourceIds.stream()
.map(id -> new IdDt(id).getIdPartAsLong())
.toList();
List<Long> ids = theResourceIds.stream().map(id -> (Long) id.getId()).toList();

// Create a predicate to filter by resource IDs
if (!ids.isEmpty()) {
Expand Down
3 changes: 2 additions & 1 deletion hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/HistoryBuilderFactory.java
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Expand Up @@ -21,6 +21,7 @@

import ca.uhn.fhir.jpa.config.JpaConfig;
import ca.uhn.fhir.jpa.model.dao.JpaPid;
import ca.uhn.fhir.rest.api.server.storage.IResourcePersistentId;
import jakarta.annotation.Nonnull;
import jakarta.annotation.Nullable;
import org.springframework.beans.factory.annotation.Autowired;
Expand Down Expand Up @@ -49,7 +50,7 @@ public HistoryBuilder newHistoryBuilder(

public HistoryBuilder newHistoryBuilder(
@Nonnull String theResourceType,
@Nonnull List<String> theResourceIds,
@Nonnull List<IResourcePersistentId<?>> theResourceIds,
@Nullable Date theRangeStartInclusive,
@Nonnull Date theRangeEndInclusive) {
return (HistoryBuilder) myApplicationContext.getBean(
Expand Down
3 changes: 2 additions & 1 deletion ...fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/JpaBulkDataExportHistoryHelper.java
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Expand Up @@ -23,6 +23,7 @@
import ca.uhn.fhir.jpa.search.PersistedJpaBundleProviderFactory;
import ca.uhn.fhir.rest.api.server.IBundleProvider;
import ca.uhn.fhir.rest.api.server.bulk.IBulkDataExportHistoryHelper;
import ca.uhn.fhir.rest.api.server.storage.IResourcePersistentId;
import jakarta.annotation.Nonnull;
import jakarta.annotation.Nullable;
import org.springframework.beans.factory.annotation.Autowired;
Expand All @@ -38,7 +39,7 @@ public class JpaBulkDataExportHistoryHelper implements IBulkDataExportHistoryHel
@Override
public IBundleProvider fetchHistoryForResourceIds(
@Nonnull String theResourceType,
@Nonnull List<String> theIdList,
@Nonnull List<IResourcePersistentId<?>> theIdList,
RequestPartitionId theRequestPartitionId,
@Nullable Date theRangeStartInclusive,
@Nonnull Date theRangeEndInclusive) {
Expand Down
10 changes: 10 additions & 0 deletions hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/index/IdHelperService.java
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Expand Up @@ -667,6 +667,16 @@ public JpaPid newPid(Object thePid, Integer thePartitionId) {
return JpaPid.fromId((Long) thePid, thePartitionId);
}

/**
* Creates a new JpaPid from partition, PK, and resource name.
* The PK is passed as a String here, but this must parse as a long. Do not mistake this for the FHIR Id
* - aka forced-id/client-assigned-id.
*
* @param thePartitionId The partition ID
* @param thePid The persistent ID as a string
* @param theResourceName The resource type name
* @return A JpaPid with the associated resource ID populated
*/
@Override
public JpaPid newPidFromStringIdAndResourceName(Integer thePartitionId, String thePid, String theResourceName) {
JpaPid retVal = JpaPid.fromId(Long.parseLong(thePid), thePartitionId);
Expand Down
3 changes: 2 additions & 1 deletion ...paserver-base/src/main/java/ca/uhn/fhir/jpa/search/PersistedJpaBundleProviderFactory.java
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Expand Up @@ -29,6 +29,7 @@
import ca.uhn.fhir.jpa.search.builder.tasks.SearchTask;
import ca.uhn.fhir.rest.api.server.IBundleProvider;
import ca.uhn.fhir.rest.api.server.RequestDetails;
import ca.uhn.fhir.rest.api.server.storage.IResourcePersistentId;
import ca.uhn.fhir.rest.param.HistorySearchStyleEnum;
import jakarta.annotation.Nonnull;
import jakarta.annotation.Nullable;
Expand Down Expand Up @@ -124,7 +125,7 @@ public IBundleProvider history(
*/
public IBundleProvider historyFromResourceIds(
String theResourceType,
@Nullable List<String> theResourceIds,
@Nullable List<IResourcePersistentId<?>> theResourceIds,
RequestPartitionId theRequestPartitionId,
@Nullable Date theRangeStartInclusive,
@Nonnull Date theRangeEndInclusive) {
Expand Down
5 changes: 3 additions & 2 deletions ...aserver-base/src/main/java/ca/uhn/fhir/jpa/search/PersistedJpaIdSearchBundleProvider.java
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Expand Up @@ -27,6 +27,7 @@
import ca.uhn.fhir.jpa.model.entity.ResourceHistoryTable;
import ca.uhn.fhir.model.primitive.InstantDt;
import ca.uhn.fhir.rest.api.server.IBundleProvider;
import ca.uhn.fhir.rest.api.server.storage.IResourcePersistentId;
import ca.uhn.fhir.rest.server.method.ResponsePage;
import jakarta.annotation.Nonnull;
import jakarta.annotation.Nullable;
Expand All @@ -50,7 +51,7 @@ public class PersistedJpaIdSearchBundleProvider implements IBundleProvider {

private final String myUuid;
private final @Nonnull String myResourceType;
private final @Nonnull List<String> myResourceIds;
private final @Nonnull List<IResourcePersistentId<?>> myResourceIds;
private final RequestPartitionId myPartitionId;
private final Date myRangeStartInclusive;
private final @Nonnull Date myRangeEndInclusive;
Expand All @@ -66,7 +67,7 @@ public class PersistedJpaIdSearchBundleProvider implements IBundleProvider {

public PersistedJpaIdSearchBundleProvider(
@Nonnull String theResourceType,
@Nonnull List<String> theResourceIds,
@Nonnull List<IResourcePersistentId<?>> theResourceIds,
RequestPartitionId thePartitionId,
@Nullable Date theRangeStartInclusive,
@Nonnull Date theRangeEndInclusive) {
Expand Down
2 changes: 1 addition & 1 deletion hapi-fhir-jpaserver-elastic-test-utilities/pom.xml
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Expand Up @@ -6,7 +6,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>8.5.8-SNAPSHOT</version>
<version>8.5.9-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

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2 changes: 1 addition & 1 deletion hapi-fhir-jpaserver-hfql/pom.xml
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Expand Up @@ -3,7 +3,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>8.5.8-SNAPSHOT</version>
<version>8.5.9-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

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2 changes: 1 addition & 1 deletion hapi-fhir-jpaserver-ips/pom.xml
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Expand Up @@ -3,7 +3,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>8.5.8-SNAPSHOT</version>
<version>8.5.9-SNAPSHOT</version>

<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>
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2 changes: 1 addition & 1 deletion hapi-fhir-jpaserver-mdm/pom.xml
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Expand Up @@ -6,7 +6,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>8.5.8-SNAPSHOT</version>
<version>8.5.9-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

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2 changes: 1 addition & 1 deletion hapi-fhir-jpaserver-model/pom.xml
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Expand Up @@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>8.5.8-SNAPSHOT</version>
<version>8.5.9-SNAPSHOT</version>

<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>
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2 changes: 1 addition & 1 deletion hapi-fhir-jpaserver-searchparam/pom.xml
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Expand Up @@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>8.5.8-SNAPSHOT</version>
<version>8.5.9-SNAPSHOT</version>

<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>
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