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Pull requests: nf-core/rnaseq

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Pull requests list

Document Qualimap read counting limitation
#1625 opened Nov 14, 2025 by pinin4fjords Loading…
3 of 5 tasks
3.22.0
2
Document RSeQC inner_distance limitation for large chromosomes
#1624 opened Nov 14, 2025 by pinin4fjords Loading…
3 tasks done
3.22.0
2
Update tximeta/tximport module to fix sample name mangling
#1623 opened Nov 14, 2025 by pinin4fjords Loading…
2 of 11 tasks
3.22.0
1
2
Optimize qualimap performance with multi-threaded name sorting
#1621 opened Nov 14, 2025 by pinin4fjords Loading… 3.22.0
1
1
Fix bigwig strand labeling for reverse-stranded libraries
#1620 opened Nov 14, 2025 by pinin4fjords Loading…
5 tasks
3.22.0
1
1
Update Credits to reflect current maintainership
#1619 opened Nov 14, 2025 by pinin4fjords Loading… 3.22.0
1
1
Fix CI: Ensure confirm-pass job runs for markdown-only PRs
#1618 opened Nov 13, 2025 by pinin4fjords Loading…
2 of 5 tasks
3.22.0
6
New module for contamination screening: Sylph
#1616 opened Oct 29, 2025 by egreenberg7 Loading…
3 of 11 tasks
6
usage - fix broken link and add latest kit version for Takara UMI prep
#1613 opened Oct 13, 2025 by pontushojer Loading…
11 tasks
3.22.0
2
Qc optimization
#1601 opened Aug 22, 2025 by edmundmiller Loading…
11 tasks
@edmundmiller
4
Dupradar fusion
#1599 opened Aug 20, 2025 by edmundmiller • Draft
11 tasks
@edmundmiller
2
Update multiqc
#1586 opened Jul 23, 2025 by pinin4fjords Loading…
11 tasks
2
Correct typos in rnaseq DE analysis docs
#1569 opened Jun 10, 2025 by johnvusich Loading…
2 tasks done
1
Update to Nextflow 25.04
#1566 opened Jun 9, 2025 by bentsherman • Draft
2
ARM Megatests
#1529 opened Mar 26, 2025 by edmundmiller Loading…
@edmundmiller
12
Container configs
#1515 opened Mar 17, 2025 by edmundmiller Loading…
@edmundmiller
15
Try matthias' fix to download
#1439 opened Oct 23, 2024 by pinin4fjords • Draft
11 tasks
2
allow integer sample names
#1421 opened Oct 18, 2024 by idot Loading…
1 task
8
Update nextflow_schema.json
#1397 opened Oct 2, 2024 by rraadd88 Loading…
1 of 11 tasks
2
Copy optimized resources from Tower
#1209 opened Feb 6, 2024 by edmundmiller • Draft
@edmundmiller
4
Add NGSCheckMate Ready for review
#993 opened Mar 31, 2023 by SPPearce Loading…
6 of 9 tasks
9
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