DREAM Lambda Benchmark

This worklflow pipeline simulates biological sequencing data to test Iota as a prefilter for Lambda (version 3).

download and installation

You can download the source code directly from GitHub:

git clone --recurse-submodules https://github.com/swewagner/DREAM_lambda_benchmark.git

Then the executables can be build:

mkdir build
cd build
cmake ..
make -j4
mkdir iota

You then need to place the iota binary in the build/iota directory and are ready to go

usage instructions

The workflow is executed via snakemake. Each run depends on different parameters which can be set in the config yaml.

requirements

• snakemake
• conda
• zzlib

copyright

This workflow is free software: you can redistribute it and/or modify it under the terms of the MIT License. It is distributed in the hope that it will be useful, but without any warranty; without even the implied warranty of merchantability or fitness for a particular purpose. See the file LICENSE.md for a full text of the licence and the rights and obligations implied.

For the submodules, additional license terms apply. See the respective files in the submodules folder.