Z-stack Depth Colorcode ImageJ FIJI plugin
-
Updated
Feb 17, 2021 - Java
#
imagej-plugin
Here are 24 public repositories matching this topic...
ExTrack MLE for diffusive noisy single-particle tracks
python image-analysis microscopy diffusion spt maximum-likelihood-estimation single-particle-tracking imagej-plugin
-
Updated
Jul 9, 2025 - Jupyter Notebook
This is a plugin for ImageJ2 for multifractal analysis of 2D and 3D images. Cite: MULTIFRAC: An ImageJ plugin for multiscale characterization of 2D and 3D stack images . IG Torre, R. J. Heck and AM Tarquis. SoftwareX, 12, 100574.
-
Updated
Aug 28, 2020 - Java
spatial and temporal cross correlations in 1D and 2D for fluorescent microscopy (ImageJ plugin)
-
Updated
Mar 25, 2024 - Java
An ImageJ plugin to analyze the flagellar beat of sperm, motile cilia beat, and sperm steering.
ciliary-motion sperm-tracking imagej-plugin flagella sperm-steering spermq-analysis flagellar-beat ciliary-beat
-
Updated
Jan 28, 2024 - Java
An ImageJ plugin to quantify ciliary shape, length, and fluorescence.
imagej-plugins fluorescence-microscopy-imaging time-lapse-imaging cilia cilium ciliaq-workflow imagej-plugin confocal-images primary-cilia cilium-length ciliary-fluorescence
-
Updated
Dec 3, 2024 - Java
Scripts for executing Fiji plugin BoneJ in headless mode in Python to compute bone microstructure metrics
-
Updated
May 1, 2025 - Python
😎 Awesome lists about ImageJ Plugins!
-
Updated
Nov 10, 2021
A toolbox to analyze spherical and filamentous objects in multifocal images with high precision.
java sperm fluid-dynamics particle-tracking particle-imaging-velocimetry high-speed-imaging sperm-tracking imagej-plugin spermq-mf multifocal-images flagella 3d-particle-tracking sperm-steering flagellar-beat 3d-particle-imaging-velocimetry
-
Updated
Aug 9, 2021 - MATLAB
A simple toolbox of ImageJ plugins for quantifying adipocyte morphology and function in tissues and in vitro.
image-analysis adipose-tissue immunohistochemical-images fluorescence-microscopy-imaging cell-biology droplets-detection adipocyte-differentiation droplet-analysis imagej-plugin adipose-tissue-segmentation lipid-droplets adipocytes
-
Updated
Mar 12, 2023
-
Updated
Jun 27, 2025 - Java
Fiji/ImageJ plugin to annotate a labeled image
-
Updated
Nov 17, 2023 - Java
Fiji/ImageJ plugin to help measuring linear distances.
-
Updated
Feb 1, 2023 - Python
ImageJ-plugin that performs standard analysis of colony formation assays conducted in 6- to 24-well dishes.
-
Updated
Jun 28, 2024 - ImageJ Macro
ImageJ plugin to quickly load multiphoton imaging data from PrairieView folders
-
Updated
Sep 11, 2023 - Java
Mageek is an ImageJ Java plugin to batch process microscope images
-
Updated
Mar 16, 2022 - Java
ImageJ plugin that converts regions from label maps into polygons
-
Updated
May 27, 2023 - Java
An ImageJ plugin to prepare images for analysis using CiliaQ.
-
Updated
Sep 21, 2023 - Java
An ImageJ plugin to analyze pixel intensity oscillations in time-lapse 2D images. For example, this allows to characterize the ciliary beat of multi-ciliated cells in time-lapse images acquired with a bright-field or phase-contrast microscope.
-
Updated
Sep 14, 2023 - Java
Package for animal pattern analysis, with machine learning for MICA Toolbox (beta)
-
Updated
Jan 12, 2024 - Python
Improve this page
Add a description, image, and links to the imagej-plugin topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the imagej-plugin topic, visit your repo's landing page and select "manage topics."