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@zhanglabtools

zhanglabtools

Dr. Shihua Zhang's laboratory

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  1. STAGATE STAGATE Public

    Forked from QIFEIDKN/STAGATE

    Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics

    Python 76 12

  2. DSMO.course DSMO.course Public

    Data Science and Matrix Optimization course

    74 37

  3. DeepLearningTheory.course DeepLearningTheory.course Public

    Deep Learning Theory course

    27 4

  4. STAligner STAligner Public

    Forked from zhoux85/STAligner

    STAligner: Integrating spatial transcriptomics data across different conditions, technologies, and developmental stages

    Jupyter Notebook 24

  5. BrainAlign BrainAlign Public

    Code for "Whole brain alignment of spatial transcriptomics between humans and mice with BrainAlign"

    Python 13 2

  6. AI4OR.course AI4OR.course Public

    Artificial Intelligence for Operations Research course

    10 1

Repositories

Showing 10 of 41 repositories
  • STAVAG Public

    Uncovering directionally and temporally variable genes with STAVAG

    zhanglabtools/STAVAG’s past year of commit activity
    Jupyter Notebook 4 0 0 0 Updated Nov 5, 2025
  • CAMEX Public
    zhanglabtools/CAMEX’s past year of commit activity
    Jupyter Notebook 5 MIT 4 0 0 Updated Oct 26, 2025
  • STAMapper Public
    zhanglabtools/STAMapper’s past year of commit activity
    Jupyter Notebook 4 MIT 3 0 0 Updated Oct 3, 2025
  • STADiffuser Public Forked from messcode/STADiffuser
    zhanglabtools/STADiffuser’s past year of commit activity
    Python 0 MIT 2 0 0 Updated Sep 20, 2025
  • STAX Public
    zhanglabtools/STAX’s past year of commit activity
    Python 1 MIT 1 0 0 Updated Sep 9, 2025
  • CAMUS Public
    zhanglabtools/CAMUS’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Aug 21, 2025
  • NPC_scRNA_Spatial_code Public

    Data Analysis Process of "Single-cell and spatial transcriptomics reveal the molecular and histological mechanisms of radioresistance and immune escape in recurrent nasopharyngeal carcinoma"

    zhanglabtools/NPC_scRNA_Spatial_code’s past year of commit activity
    Jupyter Notebook 8 3 0 0 Updated Mar 29, 2025
  • DeepLearningTheory.course.2024 Public Forked from zhanglabtools/DeepLearningTheory.course

    Deep Learning Theory course

    zhanglabtools/DeepLearningTheory.course.2024’s past year of commit activity
    2 4 0 0 Updated Jan 8, 2025
  • Mactop Public Forked from ydduanran/Mactop

    deciphering chromatin domain, domain community and chromunity for 3D genome maps

    zhanglabtools/Mactop’s past year of commit activity
    Jupyter Notebook 2 MIT 3 0 0 Updated Dec 30, 2024
  • TADGATE Public

    TADGATE is a computational tool to identify TADs in Hi-C contact map with a graph attention autoencoder.

    zhanglabtools/TADGATE’s past year of commit activity
    Jupyter Notebook 4 MIT 1 0 1 Updated Dec 27, 2024
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