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Artur-man merged 1 commit into from
Mar 8, 2026
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add R-universe instructions #275

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24 changes: 24 additions & 0 deletions README.md
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Expand Up @@ -77,8 +77,32 @@ On **Ubuntu** you may need [`libopencv-dev`](https://packages.debian.org/sid/lib
sudo apt-get install libopencv-dev
```

## Installation (R-universe)

You can also install binaries for some Linux, Windows and MacOS setups via [r-universe](https://bimsbbioinfo.r-universe.dev/builds) which you may require
R version >= 4.5.0:

``` r
install.packages('VoltRon', repos = c('https://bimsbbioinfo.r-universe.dev',
'https://cloud.r-project.org'))
```

## Dependencies

### VoltRonStore

VoltRon incorporates `VoltRonStore` package to install dependencies necessary to run VoltRon objects on disk for large images and data matrices.
The script below will install dependencies such `BPCells`, `ImageArray`, `HDF5DataFrame` etc.

``` r
install.packages('VoltRonStore', repos = c('https://bimsbbioinfo.r-universe.dev',
'https://artur-man.r-universe.dev',
'https://bnprks.r-universe.dev',
'https://cloud.r-project.org'))
```

See [https://bimsbbioinfo.r-universe.dev/builds](https://bimsbbioinfo.r-universe.dev/builds) for more information.

### RBioformats

VoltRon incorporates `RBioformats` package to import images from `ome.tiff` files, which requires [Java JDK](https://www.oracle.com/java/technologies/downloads/?er=221886) to be available in your system:
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