Implement Tier 1 Transpiler

[shuchenliu]

Add Tier 1 transpiler logic and associated driver class for generating Elasticsearch query payloads for given TRAPI queries.

[codecov]

Codecov Report

❌ Patch coverage is 8.52713% with 118 lines in your changes missing coverage. Please review.

Files with missing lines	Patch %	Lines
...etriever/data_tiers/tier_1/elasticsearch/driver.py	0.00%	78 Missing ⚠️
...ever/data_tiers/tier_1/elasticsearch/transpiler.py	0.00%	40 Missing ⚠️

Files with missing lines	Coverage Δ
src/retriever/config/general.py	100.00% <100.00%> (ø)
...ever/data_tiers/tier_1/elasticsearch/transpiler.py	0.00% <0.00%> (ø)
...etriever/data_tiers/tier_1/elasticsearch/driver.py	0.00% <0.00%> (ø)

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[tokebe]

Looks pretty good-- I've made a few notes, and you've got a few complaints from the github actions (sorry for not having those set up right prior).

You'll want to make sure to commit the lockfile when adding dependencies. Also, to shortcut waiting on actions to see if you've upset the type checker/etc., I'd recommend running task fixup in the workspace to see what the linter/type checker/etc. have to say. You can also run task hook to make it so these run automatically and must pass when making a commit.

Codecov is complaining, as well. For the sake of time, don't worry about writing tests right now, but if you have time in the future please do add tests if you can.

[shuchenliu]

All suggested code changes were applied. Test coverage will definitely be addressed in future iterations.

[tokebe]

The PR still has problems-- linting and typechecking have pointed out errors that would cause runtime failures (request_timeout vs query_timeout in the config, etc.)

For the sake of time, I've pulled your PR into a branch and am fixing it, but in the future you'll want to make sure you're using ruff and basedpyright in your editor as they're set up for the workspace, or running task fixup in the workspace commandline, so you can catch these kinds of problems early.