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Output differences between version 3.2, 3.3.2 and 3.3.3

Status: Open.

#105 In CSU-KangHu/HiTE;

· jkh00 opened on May 29, 2026

error for conda install

Status: Open.

#104 In CSU-KangHu/HiTE;

· Zhenlisme opened on May 11, 2026

TE classification issues

Status: Open.

#103 In CSU-KangHu/HiTE;

· dmckeow opened on Apr 9, 2026

HiTE stuck at “Start 3.1: Coarse-grained boundary mapping”

Status: Open.

#101 In CSU-KangHu/HiTE;

· ChuanzhengWei opened on Feb 28, 2026

reset folder

Status: Open.

#100 In CSU-KangHu/HiTE;

· frouin opened on Feb 3, 2026

Chromosome Length Issue

Status: Open.

#99 In CSU-KangHu/HiTE;

· WangZhSi opened on Jan 22, 2026

Missing *.domain files in pan_run_hite_single output

Status: Open.

#98 In CSU-KangHu/HiTE;

· CJHtea opened on Jan 19, 2026

What are the GPU requirements for the panHiTE workflow?

Status: Open.

#97 In CSU-KangHu/HiTE;

· wiley1iu opened on Dec 16, 2025

missing output files panHiTE.CorePan_fitmodel.pdf and panHiTE.CorePan_fitsmooth.pdf

Status: Open.

#95 In CSU-KangHu/HiTE;

· 950823 opened on Dec 5, 2025

Issue: Inconsistent GFF Attribute Handling and ID Requirements

Status: Open.

#94 In CSU-KangHu/HiTE;

· elenitskorda opened on Dec 4, 2025

Bug Report: LTR Element Identification Fails When Running HiTE via Singularity Container

Status: Open.

#93 In CSU-KangHu/HiTE;

· Scy-bio opened on Dec 3, 2025

Suggested bug fix for ready_for_MSA.sh

Status: Open.

#92 In CSU-KangHu/HiTE;

· markcharder opened on Nov 30, 2025