add functionality to parse spectra directly from ms2spectrum objects … #253
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This pull request introduces a new function to the core processing workflow of the
ms2pippackage, enabling direct handling of PSMs (peptide-spectrum matches) that already have attachedMS2Spectrumobjects. Additionally, it makes necessary imports and updates the package's public API to expose this new functionality.New processing function for pre-attached spectra:
process_MS2_spectrafunction tocore.py, allowing users to process PSMs with pre-attachedMS2Spectrumobjects, including spectrum extraction, prediction, and optional correlation computation. This function streamlines workflows where spectra are already parsed and available in memory.API and import updates:
MS2Spectrumfromms2rescore_rsincore.pyto support the new processing function.process_observed_spectrato the package's public API in__init__.py, making the new processing capability accessible to users.