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EGA-archive

European Genome-Phenome Archive

16 followers
https://ega-archive.org

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ega-quickview ega-quickview Public

FUSE file system to access EGA files securely and remotely

C 5
crypt4gh crypt4gh Public

GA4GH cryptographic tools

Python 19 13
ega-download-client ega-download-client Public

A Python-based EGA download client

Python 107 52
beacon2-pi-api beacon2-pi-api Public

Beacon v2 Production Implementation (API)

Python 8 10

Repositories

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All C Dockerfile HTML Java JavaScript Nextflow Perl PLpgSQL Python R Rust Shell TypeScript

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Showing 10 of 68 repositories

beacon-template-ui Public

EGA-archive/beacon-template-ui’s past year of commit activity

JavaScript 2 Apache-2.0 3 0 0 Updated Oct 6, 2025
crypt4gh Public
GA4GH cryptographic tools

EGA-archive/crypt4gh’s past year of commit activity

Python 19 Apache-2.0 13 3 0 Updated Oct 6, 2025
AF_hail_pipeline Public
This pipeline generates a VCF annotated with allele frequencies stratified by ancestry and sex.

EGA-archive/AF_hail_pipeline’s past year of commit activity

Python 0 0 0 0 Updated Oct 6, 2025
beacon2-pi-api Public
Beacon v2 Production Implementation (API)

EGA-archive/beacon2-pi-api’s past year of commit activity

Python 8 Apache-2.0 10 1 0 Updated Oct 3, 2025
beacon2-ri-tools-v2 Public

EGA-archive/beacon2-ri-tools-v2’s past year of commit activity

Python 4 Apache-2.0 8 5 0 Updated Oct 1, 2025
execution-qc-parsing Public

EGA-archive/execution-qc-parsing’s past year of commit activity

Python 0 0 0 0 Updated Sep 26, 2025
ega-scoring Public

EGA-archive/ega-scoring’s past year of commit activity

R 0 0 0 0 Updated Sep 26, 2025
ega2beacon_metadata Public Forked from MauricioMoldes/ega2beacon_metadata
Converts EGA metadata to Beacon metadata

EGA-archive/ega2beacon_metadata’s past year of commit activity

Python 0 1 0 0 Updated Sep 25, 2025
QC Public

EGA-archive/QC’s past year of commit activity

JavaScript 0 Apache-2.0 0 0 0 Updated Sep 25, 2025
AF_bcftools_pipeline Public
Pipeline to run QC and calculate AFs stratified by sex and ancestry using bcftools

EGA-archive/AF_bcftools_pipeline’s past year of commit activity

Nextflow 0 0 0 0 Updated Sep 19, 2025

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