Fix failing pydatic tests

.github/workflows/run-tests.yml

@@ -0,0 +1,27 @@
+name: Run Tests on PR
+
+on:
+  pull_request:
+    branches: [ "main" ]  # Runs when PR targets 'main'
+    types: [opened, synchronize]  # Runs when PR is opened or updated
+
+jobs:
+  test:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4  # Check out the repository
+
+      - name: Set up Python
+        uses: actions/setup-python@v4
+        with:
+          python-version: "3.10"
+
+      - name: Install dependencies
+        run: |
+          pip install -r requirements.txt
+
+      - name: Run tests
+        run: |
+          cd app/
+          cp ../sample-env .env
+          python -m unittest

.gitlab-ci.yml

@@ -27,7 +27,6 @@ variables:
 
   rules:
     - if: '$CI_DEPLOY_FREEZE == null'
-      when: always
 
 .deploy:
   stage: deploy
@@ -51,6 +50,7 @@ variables:
 # Build docker image for all branches
 build:
   extends: .build
+  needs: ["Test"]
 
 # Prod:WP40:HL:
 Prod:

app/tests/test_resolver.py

@@ -10,45 +10,45 @@ def setUp(self):
         self.client = TestClient(app)
         self.api_prefix = ""
         self.mock_search_api_url = "/id"
-        self.stable_id = "ENSG00000139618"
+        self.stable_id = "ENSAROG00010015245"
 
         self.mock_single_search_results_success = {
             "matches": [
-                {"genome_id": "genome1", "unversioned_stable_id": "ENSG00000139618"}
+                {"genome_id": "genome1", "unversioned_stable_id": "ENSAROG00010015245"}
             ]
         }
         self.mock_single_metadata_results_success = {
             "genome1": {
-                "assembly": {"accession_id": "GCA_000001405.28", "name": "GRCh38"},
-                "scientific_name": "Homo sapiens",
-                "common_name": "Human",
-                "type": "genome",
-                "unversioned_stable_id": "ENSG00000139618",
+                "assembly": {"accession_id": "GCA_018555375.2", "name": "ASM1855537v1.1"},
+                "scientific_name": "Anguilla rostrata",
+                "common_name": "American eel",
+                "type": {"kind": "strain", "value": "reference"},
+                "unversioned_stable_id": "ENSAROG00010015245",
             }
         }
 
         self.mock_multiple_search_results_success = {
             "matches": [
-                {"genome_id": "genome1", "unversioned_stable_id": "ENSG00000139618"},
-                {"genome_id": "genome2", "unversioned_stable_id": "ENSG00000139618"},
+                {"genome_id": "genome1", "unversioned_stable_id": "ENSAROG00010015245"},
+                {"genome_id": "genome2", "unversioned_stable_id": "ENSAROG00010015245"},
             ]
         }
 
         # Mock metadata API
         self.mock_multiple_metadata_results_success = {
             "genome1": {
-                "assembly": {"accession_id": "GCA_000001405.28", "name": "GRCh38"},
-                "scientific_name": "Homo sapiens",
-                "common_name": "Human",
-                "type": "genome",
-                "unversioned_stable_id": "ENSG00000139618",
+                "assembly": {"accession_id": "GCA_018555375.2", "name": "ASM1855537v1.1"},
+                "scientific_name": "Anguilla rostrata",
+                "common_name": "American eel",
+                "type": {"kind": "strain", "value": "reference"},
+                "unversioned_stable_id": "ENSAROG00010015245",
             },
             "genome2": {
-                "assembly": {"accession_id": "GCA_000001405.14", "name": "GRCh37"},
-                "scientific_name": "Homo sapiens",
-                "common_name": "Human",
-                "type": "genome",
-                "unversioned_stable_id": "ENSG00000139618",
+                "assembly": {"accession_id": "GCA_018555375.3", "name": "ASM1855537v3"},
+                "scientific_name": "Anguilla rostrata",
+                "common_name": "American eel",
+                "type": {"kind": "strain", "value": "reference"},
+                "unversioned_stable_id": "ENSAROG00010015245",
             },
         }