Clair series long-read somatic model training workflow

This directory contains model training workflow templates for the Clair series, including ClairS and ClairS-TO.

The workflows include SS (synthetic sample) training and SSRS (synthetic sample and real sample) training. SS builds models from synthetic tumor/normal mixtures, while SSRS further enhances models with real cancer samples.

ClairS

• Guide: clairs/README.md
• SS workflow: clairs/clairs_ss_model_training_workflow.sh
• SSRS workflow: clairs/clairs_ssrs_model_training_workflow.sh

ClairS-TO

• Guide: clairs-to/README.md
• SS workflow: clairs-to/clairs-to_ss_model_training_workflow.sh
• SSRS workflow: clairs-to/clairs-to_ssrs_model_training_workflow.sh

Run the SS workflow first, then the SSRS workflow.