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ENH: Update the napari notebook #220

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0f3737f
ENH: Update napari notebook example
ntatsisk May 16, 2023
cd6299a
COMP: Remove qt version pins
ntatsisk May 17, 2023
d45fd94
COMP: Add CI dependencies for napari notebook
ntatsisk Jul 15, 2023
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5 changes: 2 additions & 3 deletions .binder/requirements.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -8,8 +8,7 @@ numpy
torch>=1.9
monai>=1.0.1
matplotlib==3.3.1
PyQt5==5.15.0
PyQt5-sip==12.8.0
QtPy==1.9.0
voila
tqdm
napari[all]
itk-napari-conversion
12 changes: 8 additions & 4 deletions .github/workflows/notebook-test.yml
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Expand Up @@ -14,11 +14,15 @@ jobs:
- uses: actions/setup-python@v3
with:
python-version: '3.9'
- name: qt libs
uses: tlambert03/setup-qt-libs@v1
- name: Install build dependencies
run: |
python -m pip install --upgrade pip
python -m pip install -r ./.binder/requirements.txt
python -m pip install pytest nbmake
uses: aganders3/headless-gui@v1
with:
run: |
python -m pip install --upgrade pip
python -m pip install -r ./.binder/requirements.txt
python -m pip install pytest nbmake
- name: Test notebooks
shell: bash
run: |
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147 changes: 120 additions & 27 deletions examples/ITK_Example14_WorldCoordinatesExplanation_Napari.ipynb
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2 changes: 2 additions & 0 deletions examples/requirements.txt
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Expand Up @@ -6,3 +6,5 @@ ipywidgets>=7.5.1
ipympl>=0.5.7
voila>=0.3.4
pyinstaller
napari[all]
itk-napari-conversion