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Add jupyter notebook execution as CI test#474

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joezuntz wants to merge 13 commits into
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reenable-notebook
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Add jupyter notebook execution as CI test#474
joezuntz wants to merge 13 commits into
masterfrom
reenable-notebook

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Make sure the welcome notebook works

@joezuntz joezuntz marked this pull request as ready for review July 3, 2026 13:16
@joezuntz joezuntz requested a review from Copilot July 3, 2026 13:16

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Pull request overview

This PR adds a new CI job intended to execute the “Welcome to TXPipe” Jupyter notebook to ensure it continues to run successfully, while also making several small pipeline/IO fixes that support running the example workflow.

Changes:

  • Add a GitHub Actions “Notebook” job that restores the cached conda env + example data and runs the welcome notebook.
  • Fix/align Fourier/covariance metadata and map-handling (binning metadata parsing, mask/map Healpix reads, tracer bin counts).
  • Update defaults/dependencies to support the example workflow (mask threshold default, bump sacc version).

Reviewed changes

Copilot reviewed 6 out of 9 changed files in this pull request and generated 5 comments.

Show a summary per file
File Description
txpipe/utils/nmt_utils.py Allow ell-binning recovery from SACC metadata by stripping binning/ prefixes.
txpipe/twopoint_fourier.py Minor noise-metadata logic cleanup and a whitespace-only change.
txpipe/metadata.py Add nbin_source / nbin_lens into produced metadata.
txpipe/maps.py Change default mask_threshold for density-map generation.
txpipe/covariance.py Switch to Healpix reads and resample mask to match density-map resolution; adjust mask-name mapping.
bin/environment-perlmutter.yml Bump sacc[all] requirement.
bin/environment-local.yml Bump sacc[all] requirement.
.github/workflows/ci.yml Add Notebook CI job to execute the welcome notebook.

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Comment thread txpipe/covariance.py
Comment thread .github/workflows/ci.yml
Comment thread .github/workflows/ci.yml
Comment thread txpipe/twopoint_fourier.py Outdated
Comment thread txpipe/twopoint_fourier.py Outdated
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2 participants