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1. benchmarking_SV benchmarking_SV Public

   Updated figures for "A benchmarking of WGS-based structural variant callers" paper

   Jupyter Notebook 27 7

2. benchmarking_error_correction benchmarking_error_correction Public

   This is the GitHub repository for our benchmarking study "Benchmarking of computational error-correction methods for next-generation sequencing".

   Jupyter Notebook 12 7

3. imrep imrep Public

   Forked from mandricigor/imrep

   ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.

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4. pyTCR pyTCR Public

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5. RNA-seq RNA-seq Public

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6. review-technology-dictates-algorithms review-technology-dictates-algorithms Public

   A systematic survey of algorithmic foundations and methodologies across 107 alignment methods (1988-2021), for both short and long reads. We provide a rigorous experimental evaluation of 11 read al…

   Jupyter Notebook 8 3