v4.0.4

Introducing Cellpose-SAM!

New in cellpose v4

• Cellpose-SAM aka CP4 is fully integrated in to the CLI/API/GUI and notebooks
• cellpose.models.Cellpose class was removed, users should now only use cellpose.models.CellposeModel
• Size estimation via cellpose.models.SizeModel class was removed. Users don't have to use the diameter setting since CP4 is much more robust to object size.
• Denoising components via cellpose.denoise is currently not available.
• Added more comprehensive testing
• Better utilization of MPS for Mac users when doing 3D segmentation
• Added --save_each flag for training from the CLI
• More details are available in the paper, talk, and in the docs.

New Contributors

• @KevinCortacero made their first contribution in #1080
• @unikill066 made their first contribution in #1159

Changelog for early cellpose v4 changes: v4.0.1...v4.0.4