Update productivity anomaly dataset (productivity_anomaly)

[BBeltz1]

• Update indicator and build package
• Re-knit comparison document

[atyrell3]

Not sure if this matters, but there are two spellings, "All" and "ALL", in the Var column (sentence case seems to be for survey data and all caps for assessment data).

Also, it looks like windowpane flounder survey data didn't have the Jurisdiction assigned correctly, as it is NA but should be NEFMC.

[andybeet]

I think @MGrezlik can answer the Windowpane issue

[MGrezlik]

The Jurisdiction column is added from ecodata::species_groupings here. Windowpane Jurisdiction is 'NA' in that data object when it should be NEFMC

[jcaracappa1]

will it break anything else if we change that species_groupings juristiction for windowpane?

[andybeet]

i can't think of anything. i think the most recent script that created that object was in SOE_data repo. Warning: its horrible!

[jcaracappa1]

@MGrezlik can you make that change to SOE_Data and rerunning the plots in this branch to make sure they went through

[MGrezlik]

@jcaracappa1 @andybeet I think ecodata::species_groupings is created by ecodata::get_species_groupings. Not SOE_data::Create_SOE_species_list. I'm happy to make the edit, just want to confirm before I edit the wrong script

[jcaracappa1]

@jcaracappa1 @andybeet I think ecodata::species_groupings is created by ecodata::get_species_groupings. Not SOE_data::Create_SOE_species_list. I'm happy to make the edit, just want to confirm before I edit the wrong script

Yes that's fine to edit in ecodata