Release NVIDIA BioNeMo Framework v2.6.3 · NVIDIA/bionemo-framework

Updates & Improvements

Fixes numerous issues with Evo2 model:
1. Inference/Generation issues resolved. #890
2. FP8 training resumption issues resolved. #973
3. Bug in inference script that concerns checkpoint loading is fixed. #950
ESM2 LoRA model inference issue resolved. #996
Added experimental evo2-mamba model. #888
Updated base Docker image to nvidia-pytorch 25.06-py3
NCCL issue in ESM2 pretraing resolved. #970

Fix test_train_evo2_stops test by @balvisio in #965
Enable test_train_evo2_stop_at_max_steps_and_continue. by @balvisio in #966
automated benchmarks: esm2 650M training analogous to bionemo-recipes by @dorotat-nv in #975
Fix database path in esm2_pretrain_recipes by @pstjohn in #978
Add fp8 stop and go test for evo2 by @jwilber in #974
Update Docs Banner for GitHub Pages-hosted Docs by @tshimko-nv in #981
Add release notes for v2.6.2 (25.06) by @trvachov in #971
Evo2 Generation fixes and necessary base dependency and container updates. Large change. by @jwilber in #949
Point NeMo submodule back to main repo by @trvachov in #984
Use new b2b kernels in evo2 jet tests by @jwilber in #985
change where dtype is found in checkpoint export by @pstjohn in #989
Evo2 Mamba by @jstjohn in #888
Adding inference CDS length tests by @jstjohn in #991
Fix PIL CVE by @trvachov in #992
[BIONEMO-2334] Patch TE to fix Evo2 stop and go training by @balvisio in #987
Fix bug in evo2-mamba train and add test by @jstjohn in #994
Fix esm2 lora inference by @yzhang123 in #996
Reset parameters for the ESM-2 contact head on HF export by @pstjohn in #983

Full Changelog: v2.6.2...v2.6.3