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Fix minimum dependency version support#666

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egillax merged 17 commits into
developfrom
660-old-R-versions
Jun 17, 2026
Merged

Fix minimum dependency version support#666
egillax merged 17 commits into
developfrom
660-old-R-versions

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@egillax

@egillax egillax commented Jun 16, 2026

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Summary

  • raise dependency floors needed for old-R-compatible installs and add an internal %||% fallback
  • make imputation and normalizer SQL generation work with the dependency floor stack
  • require DuckDB-backed Andromeda (>= 1.0.0) and remove SQLite-backed Andromeda special cases
  • add a manual dependency-floor GitHub Actions workflow

Testing

  • Rscript -e 'testthat::test_local("tests/testthat", filter = "andromedahelperfunctions|normalizers|preprocessingData|simulation", reporter = "summary")'\n- R CMD build --no-build-vignettes --no-manual .\n- R CMD check --no-manual --no-build-vignettes --ignore-vignettes --no-tests --no-examples PatientLevelPrediction_*.tar.gz

@codecov

codecov Bot commented Jun 16, 2026

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Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 89.73%. Comparing base (d38631e) to head (a07de7b).
⚠️ Report is 6 commits behind head on develop.

Additional details and impacted files
@@             Coverage Diff             @@
##           develop     #666      +/-   ##
===========================================
+ Coverage    89.37%   89.73%   +0.36%     
===========================================
  Files           49       49              
  Lines        13776    13689      -87     
===========================================
- Hits         12312    12284      -28     
+ Misses        1464     1405      -59     

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@egillax
egillax merged commit ea9ba61 into develop Jun 17, 2026
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@egillax
egillax deleted the 660-old-R-versions branch June 17, 2026 08:41
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