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Merged
alex-omophub merged 18 commits into from
Jun 1, 2026
Merged

v1.8.1 prep #22

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9292470
Add FHIR resolver example script
Apr 10, 2026
e618f8d
Implement FHIR type interoperability and client helpers
Apr 14, 2026
ba0cb9c
Refactor examples to remove hardcoded API keys
Apr 14, 2026
7f2014f
Merge branch 'main' into develop
alex-omophub Apr 14, 2026
7004055
Add aiohappyeyeballs and update aiohttp dependencies in uv.lock (#17)
alex-omophub May 20, 2026
968070c
v1.71. prep
May 20, 2026
8b7363a
Merge branch 'main' into develop
alex-omophub May 20, 2026
c80ff44
Update search examples to reflect new API response structures
May 20, 2026
ee08fca
Refactor search examples to streamline API response handling
May 21, 2026
a1996f1
Enhance FHIR resolution capabilities and response structure (#20)
alex-omophub May 25, 2026
7e27854
Update CHANGELOG for version 1.8.0 and add new FHIR resolution examples
May 25, 2026
b5a0c0f
Enhance README with detailed FHIR resolution examples
May 25, 2026
a887c47
Merge branch 'main' into develop
alex-omophub May 25, 2026
2fe2cae
Update GitHub Actions workflow to use latest action versions
May 25, 2026
eae1f92
Update CI workflow to use actions/setup-python@v6 for improved compat…
May 25, 2026
d5cb814
Update CHANGELOG and refactor search endpoints to use new canonical path
Jun 1, 2026
cc986ea
Refactor AsyncSearch to simplify API request handling
Jun 1, 2026
3512066
Merge branch 'main' into develop
alex-omophub Jun 1, 2026
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6 changes: 3 additions & 3 deletions .github/workflows/ci.yml
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Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -12,7 +12,7 @@ jobs:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v6
- uses: actions/setup-python@v5
- uses: actions/setup-python@v6
with:
python-version: "3.12"
- name: Install dependencies
Expand All @@ -34,7 +34,7 @@ jobs:
python-version: ["3.10", "3.11", "3.12", "3.13"]
steps:
- uses: actions/checkout@v6
- uses: actions/setup-python@v5
- uses: actions/setup-python@v6
with:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
Expand All @@ -58,7 +58,7 @@ jobs:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v6
- uses: actions/setup-python@v5
- uses: actions/setup-python@v6
with:
python-version: "3.12"
- name: Install dependencies
Expand Down
6 changes: 3 additions & 3 deletions .github/workflows/publish.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -14,7 +14,7 @@ jobs:
- uses: actions/checkout@v6
with:
fetch-depth: 0 # Required for hatch-vcs to get version from tags
- uses: actions/setup-python@v5
- uses: actions/setup-python@v6
with:
python-version: "3.12"
- name: Install build tools
Expand All @@ -24,7 +24,7 @@ jobs:
- name: Build package
run: python -m build
- name: Upload distributions
uses: actions/upload-artifact@v5
uses: actions/upload-artifact@v7
with:
name: release-dists
path: dist/
Expand All @@ -39,7 +39,7 @@ jobs:
id-token: write # Required for trusted publishing
steps:
- name: Download distributions
uses: actions/download-artifact@v5
uses: actions/download-artifact@v8
with:
name: release-dists
path: dist/
Expand Down
11 changes: 11 additions & 0 deletions CHANGELOG.md
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Original file line number Diff line number Diff line change
Expand Up @@ -5,6 +5,17 @@ All notable changes to this project will be documented in this file.
The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.1.0/),
Copy link
Copy Markdown

@cubic-dev-ai cubic-dev-ai Bot Jun 1, 2026

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P2: The [Unreleased] link still points to v1.7.1...HEAD. Update it to v1.8.1...HEAD now that v1.8.1 is the latest release, consistent with the pattern used by all prior version links.

Prompt for AI agents 
Check if this issue is valid — if so, understand the root cause and fix it. At CHANGELOG.md, line 8:

<comment>The `[Unreleased]` link still points to `v1.7.1...HEAD`. Update it to `v1.8.1...HEAD` now that v1.8.1 is the latest release, consistent with the pattern used by all prior version links.</comment>

<file context>
@@ -5,6 +5,37 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.1.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## [1.8.1] - 2026-06-01
+
+### Changed
</file context>

Copy link
Copy Markdown

@cubic-dev-ai cubic-dev-ai Bot Jun 1, 2026

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P2: Missing link definitions for [1.8.1] and [1.8.0]. Add reference-style link definitions at the bottom of the file so the version headings render as clickable links.

Prompt for AI agents 
Check if this issue is valid — if so, understand the root cause and fix it. At CHANGELOG.md, line 8:

<comment>Missing link definitions for `[1.8.1]` and `[1.8.0]`. Add reference-style link definitions at the bottom of the file so the version headings render as clickable links.</comment>

<file context>
@@ -5,6 +5,37 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.1.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## [1.8.1] - 2026-06-01
+
+### Changed
</file context>

and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

## [1.8.1] - 2026-06-01

### Changed

- `Search.semantic()`, `Search.semantic_iter()`, `AsyncSearch.semantic()`, and
`AsyncSearch.semantic_iter()` now call the canonical path
`GET /v1/search/semantic` instead of `GET /v1/concepts/semantic-search`. The
legacy path remains a permanent server-side alias (emits `Deprecation: true`
+ `Link: …rel="successor-version"` headers), so older installations of this
SDK continue to work - no breaking change for callers.

## [1.8.0] - 2026-05-25

### Added
Expand Down
10 changes: 4 additions & 6 deletions src/omophub/resources/search.py
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Original file line number Diff line number Diff line change
Expand Up @@ -322,7 +322,7 @@ def semantic(
if threshold is not None:
params["threshold"] = threshold

return self._request.get("/concepts/semantic-search", params=params)
return self._request.get("/search/semantic", params=params)

def semantic_iter(
self,
Expand Down Expand Up @@ -369,7 +369,7 @@ def fetch_page(
if threshold is not None:
params["threshold"] = threshold

result = self._request.get_raw("/concepts/semantic-search", params=params)
result = self._request.get_raw("/search/semantic", params=params)

data = result.get("data", [])
results = data.get("results", data) if isinstance(data, dict) else data
Expand Down Expand Up @@ -656,7 +656,7 @@ async def semantic(
if threshold is not None:
params["threshold"] = threshold

return await self._request.get("/concepts/semantic-search", params=params)
return await self._request.get("/search/semantic", params=params)

async def semantic_iter(
self,
Expand Down Expand Up @@ -690,9 +690,7 @@ async def fetch_page(
if threshold is not None:
params["threshold"] = threshold

result = await self._request.get_raw(
"/concepts/semantic-search", params=params
)
result = await self._request.get_raw("/search/semantic", params=params)

data = result.get("data", [])
results = data.get("results", data) if isinstance(data, dict) else data
Expand Down
24 changes: 12 additions & 12 deletions tests/unit/resources/test_search.py
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Original file line number Diff line number Diff line change
Expand Up @@ -299,7 +299,7 @@ def test_semantic_search(self, sync_client: OMOPHub, base_url: str) -> None:
},
"meta": {"pagination": {"page": 1, "has_next": False, "total_items": 1}},
}
route = respx.get(f"{base_url}/concepts/semantic-search").mock(
route = respx.get(f"{base_url}/search/semantic").mock(
return_value=Response(200, json=semantic_response)
)

Expand All @@ -316,7 +316,7 @@ def test_semantic_search_with_filters(
self, sync_client: OMOPHub, base_url: str
) -> None:
"""Test semantic search with all filters."""
route = respx.get(f"{base_url}/concepts/semantic-search").mock(
route = respx.get(f"{base_url}/search/semantic").mock(
return_value=Response(200, json={"success": True, "data": {"results": []}})
)

Expand Down Expand Up @@ -353,7 +353,7 @@ def test_semantic_iter_single_page(
],
"meta": {"pagination": {"page": 1, "has_next": False}},
}
respx.get(f"{base_url}/concepts/semantic-search").mock(
respx.get(f"{base_url}/search/semantic").mock(
return_value=Response(200, json=semantic_response)
)

Expand Down Expand Up @@ -385,7 +385,7 @@ def mock_response(request):
return Response(200, json=page1_response)
return Response(200, json=page2_response)

respx.get(f"{base_url}/concepts/semantic-search").mock(side_effect=mock_response)
respx.get(f"{base_url}/search/semantic").mock(side_effect=mock_response)

results = list(sync_client.search.semantic_iter("diabetes", page_size=1))
assert len(results) == 2
Expand All @@ -402,7 +402,7 @@ def test_semantic_iter_empty_response(
"data": [],
"meta": {"pagination": {"page": 1, "has_next": False}},
}
respx.get(f"{base_url}/concepts/semantic-search").mock(
respx.get(f"{base_url}/search/semantic").mock(
return_value=Response(200, json=semantic_response)
)

Expand Down Expand Up @@ -555,7 +555,7 @@ async def test_async_semantic_search(
"results": [{"concept_id": 4329847, "similarity_score": 0.95}],
},
}
respx.get(f"{base_url}/concepts/semantic-search").mock(
respx.get(f"{base_url}/search/semantic").mock(
return_value=Response(200, json=semantic_response)
)

Expand All @@ -568,7 +568,7 @@ async def test_async_semantic_with_filters(
self, async_client: omophub.AsyncOMOPHub, base_url: str
) -> None:
"""Test async semantic search with filters."""
route = respx.get(f"{base_url}/concepts/semantic-search").mock(
route = respx.get(f"{base_url}/search/semantic").mock(
return_value=Response(200, json={"success": True, "data": {"results": []}})
)

Expand All @@ -591,7 +591,7 @@ async def test_async_semantic_with_all_filters(
self, async_client: omophub.AsyncOMOPHub, base_url: str
) -> None:
"""Test async semantic search with all available filters."""
route = respx.get(f"{base_url}/concepts/semantic-search").mock(
route = respx.get(f"{base_url}/search/semantic").mock(
return_value=Response(200, json={"success": True, "data": {"results": []}})
)

Expand Down Expand Up @@ -629,7 +629,7 @@ async def test_async_semantic_iter_single_page(
],
"meta": {"pagination": {"page": 1, "has_next": False}},
}
respx.get(f"{base_url}/concepts/semantic-search").mock(
respx.get(f"{base_url}/search/semantic").mock(
return_value=Response(200, json=semantic_response)
)

Expand Down Expand Up @@ -674,7 +674,7 @@ def mock_response(request):
return Response(200, json=page2_response)
return Response(200, json=page3_response)

respx.get(f"{base_url}/concepts/semantic-search").mock(side_effect=mock_response)
respx.get(f"{base_url}/search/semantic").mock(side_effect=mock_response)

results = []
async for item in async_client.search.semantic_iter("diabetes", page_size=1):
Expand All @@ -696,7 +696,7 @@ async def test_async_semantic_iter_with_filters(
"data": [{"concept_id": 1, "similarity_score": 0.9}],
"meta": {"pagination": {"page": 1, "has_next": False}},
}
route = respx.get(f"{base_url}/concepts/semantic-search").mock(
route = respx.get(f"{base_url}/search/semantic").mock(
return_value=Response(200, json=semantic_response)
)

Expand Down Expand Up @@ -732,7 +732,7 @@ async def test_async_semantic_iter_empty_response(
"data": [],
"meta": {"pagination": {"page": 1, "has_next": False}},
}
respx.get(f"{base_url}/concepts/semantic-search").mock(
respx.get(f"{base_url}/search/semantic").mock(
return_value=Response(200, json=semantic_response)
)

Expand Down
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