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Replace remaining spheres with TemplateFlow #1372

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Replace remaining spheres with TemplateFlow #1372

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13300fb
Replace remaining spheres with TemplateFlow.
tsalo Jan 28, 2025
8086374
Update bids.py
tsalo Jan 28, 2025
4dfd9d5
Merge branch 'main' into templateflow-sphere
tsalo Aug 11, 2025
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129 changes: 0 additions & 129 deletions .../standard_mesh_atlases/fs_L/fs_L-to-fs_LR_fsaverage.L_LR.spherical_std.164k_fs_L.surf.gii
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127 changes: 0 additions & 127 deletions .../standard_mesh_atlases/fs_R/fs_R-to-fs_LR_fsaverage.R_LR.spherical_std.164k_fs_R.surf.gii
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17 changes: 8 additions & 9 deletions xcp_d/interfaces/bids.py
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Original file line number Diff line number Diff line change
Expand Up @@ -91,8 +91,6 @@ class CollectRegistrationFiles(SimpleInterface):
def _run_interface(self, runtime):
from templateflow.api import get as get_template

from xcp_d.data import load as load_data

hemisphere = self.inputs.hemisphere

if self.inputs.software == 'FreeSurfer':
Expand All @@ -109,14 +107,15 @@ def _run_interface(self, runtime):
)
)

# TODO: Collect from templateflow once it's uploaded.
# FreeSurfer: fs_?/fs_?-to-fs_LR_fsaverage.?_LR.spherical_std.164k_fs_?.surf.gii
# Should be tpl-fsLR_hemi-?_space-fsaverage_den-164k_sphere.surf.gii on TemplateFlow
# tpl-fsLR_hemi-?_space-fsaverage_den-164k_sphere.surf.gii
self._results['sphere_to_sphere'] = str(
load_data(
f'standard_mesh_atlases/fs_{hemisphere}/'
f'fs_{hemisphere}-to-fs_LR_fsaverage.{hemisphere}_LR.spherical_std.'
f'164k_fs_{hemisphere}.surf.gii'
get_template(
template='fsLR',
space='fsaverage',
hemi=hemisphere,
density='164k',
desc=None,
suffix='sphere',
)
)

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