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Adding dockerfile suitable for production use #7

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Adding dockerfile suitable for production use
Mar 4, 2025
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forgot a .
Mar 4, 2025
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11 changes: 11 additions & 0 deletions README.md
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Original file line number Diff line number Diff line change
Expand Up @@ -100,6 +100,17 @@ This does the following:
- Use [Python Poetry](https://python-poetry.org) to build the Python environment
- Build the [USalign](https://github.com/pylelab/USalign) executable

## Production Docker Image

process described above is well suited for development. However, if you are deploying the RFAntibody pipeline to a production environment, it is better to have a docker image with all dependencies pre-installed. The `production.Dockerfile` Dockerfile accomplishes this. It builds an image with all dependencies installed. The RFAntibody source and scripts are installed in `/opt/rfantibody`.

### Building production Docker Image

```
docker build -t rfantibody-production -f production.Dockerfile .
```


# Usage

## HLT File Format
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28 changes: 28 additions & 0 deletions production.Dockerfile
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FROM nvidia/cuda:11.8.0-cudnn8-devel-ubuntu22.04
ARG DEBIAN_FRONTEND=noninteractive

COPY src /opt/rfantibody/src
COPY scripts /opt/rfantibody/scripts
COPY include/USalign /opt/rfantibody/include/USalign
COPY include/SE3Transformer /opt/rfantibody/include/SE3Transformer
COPY poetry.lock /opt/rfantibody/poetry.lock
COPY pyproject.toml /opt/rfantibody/pyproject.toml
COPY README.md /opt/rfantibody/README.md

RUN apt-get update && apt-get install -y software-properties-common && \
DEBIAN_FRONTEND=noninteractive add-apt-repository -y ppa:deadsnakes/ppa && \
apt-get install --no-install-recommends -y python3.10 python3-pip pipx vim make wget

RUN alias "python"="python3.10"

RUN pip install poetry
RUN mkdir /opt/rfantibody/include/dgl
RUN wget -O /opt/rfantibody/include/dgl/dgl-2.4.0+cu118-cp310-cp310-manylinux1_x86_64.whl https://data.dgl.ai/wheels/torch-2.3/cu118/dgl-2.4.0%2Bcu118-cp310-cp310-manylinux1_x86_64.whl

WORKDIR /opt/rfantibody/include/USalign
RUN make

WORKDIR /opt/rfantibody
RUN poetry install

ENTRYPOINT /bin/bash