CDS Optimization

A project that analyze codon sequences of maize.

Project structure

Code in each of the following dir is responsible for an individual task:

├─ cds_generator      \\ generate sequences
│
├─ predictor          \\ select top sequences from the outputs of cds_generator for other analysis
│
├─ codon_analysis
├─ target_finder
├─ sara
├─ scanfold
├─ supporting         \\ supporting scripts for other analysis
│
└─ report_generator   \\ gather results from analysises and make report

Code in these 2 dir are responsible for orchestrating the individual tasks:

├─ galaxy             \\ the front end of this project
│
└─ nextflow           \\ the code that puts the individual parts together to make a workflow

The best place for a quick start is the nextflow folder.