change to src structure and test change

Author: h-mayorquin

.github/workflows/caches_cron_job.yml

@@ -5,6 +5,7 @@ on:
   push:  # When someting is pushed into main this checks if caches need to re-created
     branches:
       - master
+      - main
   schedule:
     - cron: "0 12 * * *"  # Daily at noon UTC
 

.github/workflows/core-test.yml

@@ -3,6 +3,9 @@ name: Testing core
 on:
   pull_request:
     types: [synchronize, opened, reopened]
+    branches:
+      - master
+      - main
 
 concurrency:  # Cancel previous workflows on the same pull request
   group: ${{ github.workflow }}-${{ github.ref }}
@@ -29,7 +32,7 @@ jobs:
           pip install -e .[test_core]
       - name: Test core with pytest
         run: |
-          pytest -vv -ra --durations=0 --durations-min=0.001 spikeinterface/core | tee report.txt; test ${PIPESTATUS[0]} -eq 0 || exit 1
+          pytest -vv -ra --durations=0 --durations-min=0.001 src/spikeinterface/core | tee report.txt; test ${PIPESTATUS[0]} -eq 0 || exit 1
         shell: bash  # Necessary for pipeline to work on windows
       - name: Build test summary
         run: | 

.github/workflows/full-test.yml

@@ -3,7 +3,10 @@ name: Full spikeinterface tests
 on:
   pull_request:
     types: [synchronize, opened, reopened]
-
+    branches:
+      - master
+      - main
+      
 concurrency:  # Cancel previous workflows on the same pull request
   group: ${{ github.workflow }}-${{ github.ref }}
   cancel-in-progress: true

.github/workflows/s3-nwb-test.yml

@@ -2,7 +2,9 @@ name: S3 NWB Test
 on:
   pull_request:
     types: [synchronize, opened, reopened]
-
+    branches:
+      - master
+      - main
 concurrency:  # Cancel previous workflows on the same pull request
   group: ${{ github.workflow }}-${{ github.ref }}
   cancel-in-progress: true
@@ -44,4 +46,4 @@ jobs:
       - name: Install fsspec, aiohttp and requests
         run: pip install fsspec aiohttp requests
       - name: run tests
-        run: pytest spikeinterface/extractors/tests/test_nwb_s3_extractor.py
+        run: pytest src/spikeinterface/extractors/tests/test_nwb_s3_extractor.py

.pre-commit-config.yaml

@@ -0,0 +1,12 @@
+repos:
+-   repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v4.4.0
+    hooks:
+    -   id: check-yaml
+    -   id: end-of-file-fixer
+    -   id: trailing-whitespace
+-   repo: https://github.com/psf/black
+    rev: 23.1.0
+    hooks:
+    -   id: black
+        exclude: '^(doc|examples|spikeinterface|installation_tips)/'

pyproject.toml

@@ -39,11 +39,13 @@ package-data = {"spikeinterface.sorters" = ["**/*.m", "**/*.prm", "**/*.params",
 spikeinterface = ["**/tests/test_*"]
 
 [tool.setuptools.packages.find]
-where = ["."]
+where = ["src"]
 include = ["spikeinterface*"]
 namespaces = false
 exclude = ["spikeinterface.*.tests"]
 
+[tool.black]
+line-length = 120
 
 [project.urls]
 homepage = "https://github.com/SpikeInterface/spikeinterface"