This repository contain code for the following preprint: doi: https://doi.org/10.1101/2025.08.26.25334499. Following scripts were used for the analyses:
- QC_and_normalisation: Quality control, normalisation, and batch correction.
- exploratory_analysis: Exploratory analysis including principal component analysis, heatmap, density plots and sample-sample correlations.
- differential_methylation_combat: Modelling DNA methylation differences among left and right ventricle and septum.
- characterisation_of_DMRs: Characterisation of differentially methylated regions including over representation analysis
- visualisation_DMRs: Visualisation of location of differentially methylated regions in comparison to previously identified differentially accessible regions and transcribed regulatory elements
The s_names, scroll_table, and s_table helper functions are available from https://github.com/SteffanChristiansen/noecodedup/