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@UcarLab

The Ucar Lab

Develops computational models using genome datasets to study gene regulation and identify hypotheses for genomic medicine.

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  1. CMVerify CMVerify Public

    Python 2 1

  2. AMULET AMULET Public

    A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.

    Python 33 7

  3. iasva iasva Public

    Iteratively Adjusted Surrogate Variable Analysis

    R 10 1

  4. BiFET BiFET Public

    A robust statistical test for TF footprint data analyses

    R 2 2

  5. Human-immune-aging-Server Human-immune-aging-Server Public

    human-immune-aging-server [shiny application]

    R 3

  6. CoRE-ATAC CoRE-ATAC Public

    Java 9 1

Repositories

Showing 10 of 35 repositories
  • CMVerify Public
    UcarLab/CMVerify’s past year of commit activity
    Python 2 AGPL-3.0 1 0 0 Updated Mar 11, 2026
  • ATAC-seq Public Forked from TheJacksonLaboratory/ATAC-seq

    ATAC-seq Pipeline in conjunction with Duygu Ucar & Jacques Banchereau Laboratories

    UcarLab/ATAC-seq’s past year of commit activity
    Shell 2 CC-BY-4.0 7 0 0 Updated Jan 16, 2026
  • COVID-RSV-Infants Public

    Code repository for the COVID/RSV Infant Project.

    UcarLab/COVID-RSV-Infants’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 15, 2026
  • Covid19VaccineResponses Public
    UcarLab/Covid19VaccineResponses’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jul 16, 2025
  • latent_cmv_older_adults Public
    UcarLab/latent_cmv_older_adults’s past year of commit activity
    HTML 0 0 0 0 Updated Jun 4, 2025
  • ucarlab.github.io Public Forked from greenelab/lab-website-template

    The Ucar Lab website

    UcarLab/ucarlab.github.io’s past year of commit activity
    HTML 2 436 0 0 Updated Feb 12, 2025
  • Mammary_gland_aging Public

    Mammary gland aging project

    UcarLab/Mammary_gland_aging’s past year of commit activity
    HTML 8 5 0 0 Updated Nov 25, 2024
  • ERS-vs-CYT-Islet-Stress-Responses Public

    This repository contains scripts used to generate figures in paper titled 'Multi-omic Mapping of Human Pancreatic Islet Endoplasmic Reticulum and Cytokine Stress Responses Provide Type 2 Diabetes Genetic Insights'

    UcarLab/ERS-vs-CYT-Islet-Stress-Responses’s past year of commit activity
    0 0 1 0 Updated Sep 7, 2024
  • AMULET Public

    A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.

    UcarLab/AMULET’s past year of commit activity
    Python 33 GPL-3.0 7 13 1 Updated Jan 3, 2023
  • Scripts-Tutorials Public

    Repository for lab scripts and tutorials.

    UcarLab/Scripts-Tutorials’s past year of commit activity
    Python 0 0 0 0 Updated Nov 21, 2022
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