Installation: WHOI HPC

Installation and Setup on HPC All installation commands are to be run from a terminal. <user> refers to your username (and password)

1. ssh <user>@poseidon.whoi.edu
2. cd $SCRATCH
3. git clone https://github.com/WHOIGit/ifcb_classifier.git ifcbnn
4. cd ifcbnn
5. conda create -n ifcbnn --file requirements/pkgs.hpc.txt
   • If you get “conda: command not found”, the anaconda hpc Module may not be loaded. Do module load anaconda and try again.
   • You can ensure modules load when you login with module initadd anaconda
6. conda activate ifcbnn
   • If you get prompted with "conda init <SHELL_NAME>" select bash for your shell-name. You will have to log out of poseidon (exit), log back in, and navigate back to this DIR install directory.
7. pip install git+https://github.com/joefutrelle/pyifcb.git@3ad1107
8. DONE! Your installation is ready to go. You can test that things were installed correctly by doing python neuston_net.py --help. The help screen/documentation should appear.