Fix missing exit(0) when phasing is skipped#170
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niccw wants to merge 1 commit intoWedge-lab:masterfrom
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Fix missing exit(0) when phasing is skipped#170niccw wants to merge 1 commit intoWedge-lab:masterfrom
niccw wants to merge 1 commit intoWedge-lab:masterfrom
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Add an else clause to
if (!skip_phasing[sampleidx])to handle cases where phasing is skipped.When the flags
skip_allele_counting=true, skip_preprocessing=false, and skip_phasing=trueare used, the program now exits successfully (return 0) instead of continuing execution and throw error.