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Achievement: Pair ExtraordinaireAchievement: Pull SharkAchievement: YOLO

Achievements

Achievement: Pair ExtraordinaireAchievement: Pull SharkAchievement: YOLO

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  1. viral-intrahost-variant-workflow viral-intrahost-variant-workflow Public

    Containerized Nextflow DSL2 workflow for viral intra-host variant calling (iSNV), quasispecies haplotype reconstruction, and evolutionary selection analysis.

    Nextflow

  2. rnaseq-nfcore-wrapper-alphavirus rnaseq-nfcore-wrapper-alphavirus Public

    SLURM execution wrapper and configuration layer for nf-core/rnaseq used in viral RNA-seq projects.

    Python 1

  3. libs-spectroscopy-workbench libs-spectroscopy-workbench Public

    Python software for LIBS spectral processing, baseline correction, elemental line identification, and simulated acquisition.

    Python 12 2

  4. preclinical-study-analysis-shiny preclinical-study-analysis-shiny Public

    R/Shiny app for longitudinal mouse study visualization and export from spreadsheet inputs.

    R

  5. lab-bioinfo-templates lab-bioinfo-templates Public

    Jonsson Lab reusable bioinformatics analysis templates + Quarto gallery site

    JavaScript

  6. akodon-genome-assembly-workflow akodon-genome-assembly-workflow Public

    Genome assembly and annotation pipeline for Akodon using 10x Genomics Supernova and BRAKER-based gene prediction on HPC.

    Shell