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Bump the dev-dependencies group in /symja_android_library with 2 updates#1132

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axkr merged 1 commit intomasterfrom
dependabot/maven/symja_android_library/dev-dependencies-f1e6677f81
Feb 28, 2025
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Bump the dev-dependencies group in /symja_android_library with 2 updates#1132
axkr merged 1 commit intomasterfrom
dependabot/maven/symja_android_library/dev-dependencies-f1e6677f81

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@dependabot dependabot bot commented on behalf of github Feb 28, 2025

Bumps the dev-dependencies group in /symja_android_library with 2 updates: org.biojava:biojava-core and org.biojava:biojava-alignment.

Updates org.biojava:biojava-core from 7.1.4 to 7.2.0

Release notes

Sourced from org.biojava:biojava-core's releases.

BioJava 7.2.0

Fixed

  • More lenient mmCIF parsing to be able to parse PDB-IHM entries #1106
  • Now AsaCalculator main constructor will use first model only instead of all #1107

Added

  • New constructor for AsaCalculator to provide Structure and model #1107
Changelog

Sourced from org.biojava:biojava-core's changelog.

BioJava 7.2.0

Fixed

  • More lenient mmCIF parsing to be able to parse PDB-IHM entries #1106
  • Now AsaCalculator main constructor will use first model only instead of all #1107

Added

  • New constructor for AsaCalculator to provide Structure and model #1107
Commits
  • 48992a6 [maven-release-plugin] prepare release biojava-7.2.0
  • 77c2911 Merge pull request #1106 from josemduarte/cifparsing-lenient
  • e0e7904 Merge pull request #1107 from josemduarte/asafix-multimodel
  • a5b46ab Review comment
  • 324319e Fix: first model is model index 0
  • c45c3dd Bugfix: ASA calculation was by default using all models. Now it will use mode...
  • 12dcb2c Another safeguard, that applies to some PDB-IHM entries
  • 65d3dcd Lenient to missing atom_site.occupancy
  • 93c1c8f Handle more missing fields in struct_ref_seq
  • be55381 Update guava dependency version to 33.4.0-jre
  • Additional commits viewable in compare view

Updates org.biojava:biojava-alignment from 7.1.4 to 7.2.0

Release notes

Sourced from org.biojava:biojava-alignment's releases.

BioJava 7.2.0

Fixed

  • More lenient mmCIF parsing to be able to parse PDB-IHM entries #1106
  • Now AsaCalculator main constructor will use first model only instead of all #1107

Added

  • New constructor for AsaCalculator to provide Structure and model #1107
Changelog

Sourced from org.biojava:biojava-alignment's changelog.

BioJava 7.2.0

Fixed

  • More lenient mmCIF parsing to be able to parse PDB-IHM entries #1106
  • Now AsaCalculator main constructor will use first model only instead of all #1107

Added

  • New constructor for AsaCalculator to provide Structure and model #1107
Commits
  • 48992a6 [maven-release-plugin] prepare release biojava-7.2.0
  • 77c2911 Merge pull request #1106 from josemduarte/cifparsing-lenient
  • e0e7904 Merge pull request #1107 from josemduarte/asafix-multimodel
  • a5b46ab Review comment
  • 324319e Fix: first model is model index 0
  • c45c3dd Bugfix: ASA calculation was by default using all models. Now it will use mode...
  • 12dcb2c Another safeguard, that applies to some PDB-IHM entries
  • 65d3dcd Lenient to missing atom_site.occupancy
  • 93c1c8f Handle more missing fields in struct_ref_seq
  • be55381 Update guava dependency version to 33.4.0-jre
  • Additional commits viewable in compare view

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Bumps the dev-dependencies group in /symja_android_library with 2 updates: [org.biojava:biojava-core](https://github.com/biojava/biojava) and [org.biojava:biojava-alignment](https://github.com/biojava/biojava).


Updates `org.biojava:biojava-core` from 7.1.4 to 7.2.0
- [Release notes](https://github.com/biojava/biojava/releases)
- [Changelog](https://github.com/biojava/biojava/blob/master/CHANGELOG.md)
- [Commits](biojava/biojava@biojava-7.1.4...biojava-7.2.0)

Updates `org.biojava:biojava-alignment` from 7.1.4 to 7.2.0
- [Release notes](https://github.com/biojava/biojava/releases)
- [Changelog](https://github.com/biojava/biojava/blob/master/CHANGELOG.md)
- [Commits](biojava/biojava@biojava-7.1.4...biojava-7.2.0)

---
updated-dependencies:
- dependency-name: org.biojava:biojava-core
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: dev-dependencies
- dependency-name: org.biojava:biojava-alignment
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: dev-dependencies
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot bot added dependencies Pull requests that update a dependency file java Pull requests that update Java code labels Feb 28, 2025
@axkr axkr merged commit ce2a9f2 into master Feb 28, 2025
4 checks passed
@dependabot dependabot bot deleted the dependabot/maven/symja_android_library/dev-dependencies-f1e6677f81 branch February 28, 2025 08:07
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