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1. kelwyres/Bactabolize kelwyres/Bactabolize Public

   Python 43 1

2. Metabolic_modelling_scripts Metabolic_modelling_scripts Public

   Scripts for improving and manipulating metabolic models using cobrapy.

   Python

3. slice_multi_gbk slice_multi_gbk Public

   Slices/subsections genbank files by either gene names, locus tags or base pair range. Handles multi-genbank files

   Python 2

4. ChimeraX_scripts ChimeraX_scripts Public

   Ever wanted to colour a 3D protein structure programatically? Well these scripts allow you to, by interfacing with ChimeraX

   Python 2

5. time_weighted_SNV_clusterer time_weighted_SNV_clusterer Public

   Clusters genomes based off user-defined SNV parameters, taking into account the mutation rate over time

   Python

6. TreeBranchLabeller TreeBranchLabeller Public

   Annotates tree branches for visualisation of multiple sequence alignments etc.

   Python