Major refactoring to match future MRtrix 3.1.0 - #137

Open

Lestropie wants to merge 19 commits into

Commits on Oct 28, 2025

Major refactoring to match future MRtrix 3.1.0
Lestropie
committed
025c9e8
Remove branch with manual implementation of dwibiasnormmask contents
Lestropie
committed
296da43

Commits on Oct 29, 2025

Add preprepco-level options -eddy_cubicflm, -eddy_mbs
Lestropie
committed
08fc89c

Commits on Nov 4, 2025

Preproc: Fix refactoring of "concat_denoise"
Lestropie
committed
208426b

Commits on Nov 11, 2025

Fix erroneous usage of eddy MBS functionality
Lestropie
committed
54d22db
Code cleanup #137
Lestropie
committed
88c031f
Use SynthStrip for T1w brain extraction
Lestropie
committed
16c93e7

Commits on Nov 17, 2025

Commits on Nov 19, 2025

Fix T1w import with -t1w_preproc but no mask

Aaron Capon
authored and
Lestropie
committed
7c5d95a

Commits on Nov 25, 2025

Update dwidenoise2
Lestropie
committed
d20cbcd

Commits on Dec 2, 2025

Permit image provided via -t1w_preproc to not have "_desc-preproc"
Lestropie
committed
09a1f2c

Commits on Jan 6, 2026

Preproc: Fix calculation of MPorder
Lestropie
committed
231de4a

Commits on Mar 4, 2026

Preproc: Fixes to inter-modal registration
Lestropie
committed
54cff60

Commits on Mar 5, 2026

Fix variable name error
Lestropie
committed
5117975

Commits on Mar 18, 2026

Merge pull request #143 from bids-apps/fix_registration_GDC
Lestropie
authored
fbfc131

Commits on Apr 26, 2026

Preproc: More robust GDC image parsing
Lestropie
committed
e7dbc79