Optimize DIA processing and improve MultiQC integration - #727

Merged

ypriverol merged 9 commits into

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Sep 6, 2026

Commits on Sep 5, 2026

dia: sample-level modifications without the 231 M-row merge
ypriverol
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d8199a7
dia: run_to_sample_codes lives in plots.general to avoid an import cycle
ypriverol
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f4d9f71
dia: peptide length histogram without materialising the sequences
ypriverol
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6edeb94
quantms: do not parse the MSstats input when tables are disabled
ypriverol
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3c981d7
dia: hand MultiQC box statistics, not raw points, for MS1 area and intensity std
ypriverol
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dfb038a
dia: import run_to_sample_codes from plots.general
ypriverol
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187a5b8
dia: by-sample intensity box uses the code-based run->sample map
ypriverol
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c60d5a6
dia: plots.dia takes run_to_sample_codes from plots.general only
ypriverol
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e08f531

Commits on Sep 6, 2026

Merge pull request #725 from bigbio/fix/dia-box-plot-stats
ypriverol
authored
e277da5