What's Changed
- Add logo by @yueqixuan in #442
- update dev branch by @ypriverol in #443
- update logo of pmultiqc by @ypriverol in #444
- minor changes in the CI/CD by @ypriverol in #445
- Fix logo issue by @yueqixuan in #449
- Update the logo for all the examples. by @ypriverol in #450
- Add citation information for bioRxiv preprint by @Copilot in #453
- citation added to the project by @ypriverol in #454
- Standardize service branding to lowercase "pmultiqc" by @Copilot in #457
- Add option to disable plot tooltips by @yueqixuan in #467
- Solve issue tooltips by @ypriverol in #468
- fix bug by @yueqixuan in #469
- update dev branch by @ypriverol in #471
- Minor bug fixed by @ypriverol in #472
- Add initial support for SDRF integration by @yueqixuan in #476
- minor changes by @ypriverol in #477
- Optimize CodeRabbitAI code suggestions by @yueqixuan in #479
- First iteration about supporting some SDRF-based plots by @ypriverol in #478
- Add support for SDRF integration by @yueqixuan in #483
- SDRF integration in more plots by @ypriverol in #484
- Minor update by @yueqixuan in #487
- fix by @yueqixuan in #489
- Security: Fix path traversal, zip bombs, command injection, and CORS vulnerabilities by @Copilot in #458
- Minor changes in the code and refactoring by @ypriverol in #488
- minor bug fixed. by @ypriverol in #490
- Add FragPipe plugin by @yueqixuan in #494
- FragPipe first implementation by @ypriverol in #495
- Add new features to the FragPipe plugin by @yueqixuan in #498
- FragPipe second iteration by @ypriverol in #499
- Add new features to the FragPipe plugin by @yueqixuan in #502
- Update dev branch by @ypriverol in #504
- Minor update by @yueqixuan in #506
- Third iteration of FragPipe support by @ypriverol in #505
- Add heatmap support to the FragPipe plugin by @yueqixuan in #509
- Heatmap for FragPipe by @ypriverol in #510
- Add Longitudinal Trends module by @yueqixuan in #513
- Update dev by @ypriverol in #514
- fix by @yueqixuan in #516
- First iteration of longitudinal trends module by @ypriverol in #515
- Optimize longitudinal trends by @yueqixuan in #519
- Minor changes in the FragPipe support by @ypriverol in #520
- Auto-update examples by @github-actions[bot] in #521
- Claude Review codebase for performance and bugs by @ypriverol in #523
- fix by @yueqixuan in #525
- Dev by @ypriverol in #524
- Add dataset download links to example reports by @ypriverol in #527
- fix: Dockerfile procps dependency by @selvaebi in #530
- Add intensity-based QC plots to FragPipe by @ypriverol in #532
- Fix by @yueqixuan in #534
- Adding Quant plots to FragPipe based on ion.tsv by @ypriverol in #533
- Refactor pmultiqc service to support FragPipe by @ypriverol in #538
- Tus - transfer improvement using Tus framework by @ypriverol in #539
- Tus implementation to resume transfer by @ypriverol in #540
- Improve FragPipe support and file handling by @ypriverol in #543
- Fix duplicate reports for ion and psm files by @ypriverol in #545
- Minor update by @yueqixuan in #547
- Fix security issue in RAR file extraction by @ypriverol in #548
- fix by @yueqixuan in #549
- Fix by @yueqixuan in #550
- Improving FragPipe by @ypriverol in #544
- Add peptide length distribution by @yueqixuan in #553
- Peptide level distributions by @ypriverol in #554
- fix by @yueqixuan in #555
- Dev by @ypriverol in #556
- Performance improvements and test verification by @ypriverol in #559
- Performance improvements by @claude by @ypriverol in #560
Full Changelog: v0.0.39...v0.0.40