Name		Name	Last commit message	Last commit date
.ipynb_checkpoints		.ipynb_checkpoints
dev		dev
figure-generating-notebooks		figure-generating-notebooks
graveyard		graveyard
.gitignore		.gitignore
.test.pdf		.test.pdf
7_perf_phases.npy		7_perf_phases.npy
Grid-Theory.ipynb		Grid-Theory.ipynb
LICENSE		LICENSE
Linear_decoding.ipynb		Linear_decoding.ipynb
Linear_decoding_clustered_initialization.ipynb		Linear_decoding_clustered_initialization.ipynb
Optimize_decoding.ipynb		Optimize_decoding.ipynb
Optimize_persistence.ipynb		Optimize_persistence.ipynb
README.md		README.md
bioAI.mplstyle		bioAI.mplstyle
decoding.ipynb		decoding.ipynb
entropy-maximisation.ipynb		entropy-maximisation.ipynb
experimental-data-ci-all.ipynb		experimental-data-ci-all.ipynb
experimental-data-ci-one-module.ipynb		experimental-data-ci-one-module.ipynb
experimental-data-ci.ipynb		experimental-data-ci.ipynb
experimental-data-energy.ipynb		experimental-data-energy.ipynb
experimental-data-verification.ipynb		experimental-data-verification.ipynb
explore-toroidal-experimental-data.ipynb		explore-toroidal-experimental-data.ipynb
explore-toroidal-experimental-data_markus.ipynb		explore-toroidal-experimental-data_markus.ipynb
grid_jacobian_maximization.ipynb		grid_jacobian_maximization.ipynb
jax_jacobian_variance_minimization.ipynb		jax_jacobian_variance_minimization.ipynb
meta-phases.ipynb		meta-phases.ipynb
methods.py		methods.py
model_comparison.ipynb		model_comparison.ipynb
models.py		models.py
modules copy.ipynb		modules copy.ipynb
modules.ipynb		modules.ipynb
neural-metric.ipynb		neural-metric.ipynb
optimize-and-line-search.ipynb		optimize-and-line-search.ipynb
optimize-jacobian-variance.ipynb		optimize-jacobian-variance.ipynb
optimize-jitter.ipynb		optimize-jitter.ipynb
perturbation_optimization.ipynb		perturbation_optimization.ipynb
phases.ipynb		phases.ipynb
place_cells.ipynb		place_cells.ipynb
plotting_functions.py		plotting_functions.py
protocol.ipynb		protocol.ipynb
ripleys-dirac-initialisation.ipynb		ripleys-dirac-initialisation.ipynb
superposition-grid-cells.ipynb		superposition-grid-cells.ipynb
test_kde.ipynb		test_kde.ipynb
testing.ipynb		testing.ipynb
uniform_manifold_sampling.ipynb		uniform_manifold_sampling.ipynb
utils.py		utils.py

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