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@bioforensics

bioforensics

The National Biodefense Analysis and Countermeasures Center (NBACC) is a one-of-a-kind facility dedicated to defending the nation against biological threats.

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  1. pytaxonkit pytaxonkit Public

    Python bindings for the TaxonKit library

    Python 41 5

  2. lusSTR lusSTR Public

    Tool to convert ForenSeq sequence strings to various annotation types for downstream analyses

    Python 7

  3. MicroHapulator MicroHapulator Public

    Tools for empirical microhaplotype calling, forensic interpretation, and simulation.

    Python 6 1

  4. MicroHapDB MicroHapDB Public

    Portable database of microhaplotype marker and allele frequency data

    Python 10 4

  5. mixder mixder Public

    Mixture deconvolution workflow for Kintelligence SNPs

    R 1 1

  6. rsidx rsidx Public

    Library for indexing VCF files for random access searches by rsID

    Python 17 4

Repositories

Showing 10 of 25 repositories
  • ezfastq Public
    bioforensics/ezfastq’s past year of commit activity
    Python 0 0 0 0 Updated Dec 15, 2025
  • pytaxonkit Public

    Python bindings for the TaxonKit library

    bioforensics/pytaxonkit’s past year of commit activity
    Python 41 5 2 0 Updated Dec 2, 2025
  • pLannotate Public Forked from mmcguffi/pLannotate

    Webserver and command line tool for annotating engineered plasmids

    bioforensics/pLannotate’s past year of commit activity
    Python 0 GPL-3.0 30 0 0 Updated Nov 7, 2025
  • staged-recipes Public Forked from conda-forge/staged-recipes

    A place to submit conda recipes before they become fully fledged conda-forge feedstocks

    bioforensics/staged-recipes’s past year of commit activity
    Python 0 BSD-3-Clause 5,693 0 0 Updated Nov 5, 2025
  • yeat Public

    YEAT: Your Everyday Assembly Tool

    bioforensics/yeat’s past year of commit activity
    Python 1 1 18 0 Updated Oct 6, 2025
  • mixder Public

    Mixture deconvolution workflow for Kintelligence SNPs

    bioforensics/mixder’s past year of commit activity
    R 1 1 2 1 Updated Oct 3, 2025
  • MicroHapDB Public

    Portable database of microhaplotype marker and allele frequency data

    bioforensics/MicroHapDB’s past year of commit activity
    Python 10 4 1 0 Updated Oct 2, 2025
  • rsidx Public

    Library for indexing VCF files for random access searches by rsID

    bioforensics/rsidx’s past year of commit activity
    Python 17 4 1 0 Updated Jul 22, 2025
  • lusSTR Public

    Tool to convert ForenSeq sequence strings to various annotation types for downstream analyses

    bioforensics/lusSTR’s past year of commit activity
    Python 7 0 1 1 Updated Jul 21, 2025
  • alpine-pixi Public
    bioforensics/alpine-pixi’s past year of commit activity
    Dockerfile 0 0 0 0 Updated Jul 9, 2025
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