Add tests for federated SPARQL queries between the curies mapping service and popular triplestores #53
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…rvice and popular triplestores properly work. Triplestores need to be deployed locally before running the tests with docker compose, if the triplestores are not deployed the tests for federated queries will be ignored. Added: - a docker-compose.yml to deploy the bioregistry, blazegraph and virtuoso - a resources/ folder in tests which contains the Dockerfile for the curies mapping service used for testing, and an init script for the triplestores - a step to start and init the triplestores in the gh action for testing - instructions to start the triplestores with docker compose in the readme - a tests/test_sparql.py file with 4 tests of federated queries using `SERVICE`: from virtuoso to curies, from blazegraph to curies, from curies to virtuoso, from curies to blazegraph
Codecov Report
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Hits 501 501
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cthoyt
reviewed
Apr 13, 2023
…e is still failing due to an issue when extracting the sparql vars
cthoyt
reviewed
Apr 14, 2023
cthoyt
reviewed
Apr 14, 2023
| blazegraph: | ||
| image: metaphacts/blazegraph-basic:2.2.0-20160908.003514-6-jetty9.4.44-jre8-45dbfff | ||
| ports: | ||
| - 8889:8080 |
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is there a reason we can't just use the default ports for each service as we expose outside of docker?
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Add tests to check if federated queries between the curies mapping service and popular triplestores properly work.
Triplestores need to be deployed locally before running the tests with docker compose, if the triplestores are not deployed the tests for federated queries will be skipped
Added:
docker-compose.ymlto deploy the bioregistry, blazegraph and virtuosoresources/folder in tests which contains the Dockerfile for the curies mapping service used for testing, and an init script for the triplestoresSERVICE: from virtuoso to curies, from blazegraph to curies, from curies to virtuoso, from curies to blazegraph