Merge pull request #76 from biosustain/API-reference-links

- API reference links for most project and dataset actions
- LIMS (Benchling) project url field

Author: dinhe878

_static/images/project-creation-3.gif

@@ -206,4 +206,10 @@ To remove a Lineage:
 ```
 ----------------------------
 
-<br/>
+## API Availability
+
+The actions described in this page can also be performed programmatically using our **FastAPI**. For more details, see the following endpoints in our API Reference:
+
+* [**/datasets**](https://datacatalog.bright.dtu.dk/api/docs#/datasets/create_dataset_datasets_post) 
+* [**/projects-datasets**](https://datacatalog.bright.dtu.dk/api/docs#/projects-datasets)
+* [**/lineage**](https://datacatalog.bright.dtu.dk/api/docs#/lineage)

_static/images/project-creation-updated2.gif

@@ -121,4 +121,11 @@ The tab displays a table view with:
 After the initial save, you can grant or remove additional permissions for a user, by selecting or deselecting the options available. Changes apply immediately.
 
 ```
+-------------------------------
+
+## API Availability
+
+The actions described above can also be performed programmatically using our **FastAPI**. For more details, see the following endpoints in our API Reference:
 
+* [**/datasets**](https://datacatalog.bright.dtu.dk/api/docs#/datasets)
+* [**/policies/datasets**](https://datacatalog.bright.dtu.dk/api/docs#/policies)

_static/images/settings_button.png

@@ -32,6 +32,15 @@ Complete all the required fields marked with **`*`**:
 * Project Description (**`*`**)
 * Access Rights (**`*`**)
 * Principal Investigator (PI) (**`*`**)
+* LIMS (Benchling) project URL _(must start with **https://bright.benchling.com**)_
+
+
+```{tip}
+
+To find the Benchling project URL, log in to Benchling, open the **Projects** section in the left sidebar, and select the project you want.  
+Click the **settings** button (<img src="../../_static/images/settings_button.png" alt="open_icon" style="height:1.2em; vertical-align:text-bottom;">) next to the project name and choose **Copy project link**.
+
+```
 
 
 ## Final Step: Complete Project Creation
@@ -43,7 +52,7 @@ Click **`Create project`** at the ***bottom*** of the page to complete the proce
 
 <br/>
 
-```{figure} ../../_static/images/project-creation-3.gif
+```{figure} ../../_static/images/project-creation-updated2.gif
 :alt: Project Creation
 :width: 93%
 :align: center
@@ -131,4 +140,13 @@ If either of these is missing, you will not be able to proceed.
 
 ```{note}
 This relationship also appears under the **Projects** tab on the **dataset home page**.
-```
+```
+
+-------------------------------- 
+
+## API Availability
+
+The actions described in this page can also be performed programmatically using our **FastAPI**. For more details, see the following endpoints in our API Reference:
+
+* [**/projects**](https://datacatalog.bright.dtu.dk/api/docs#/projects/create_project_projects_post)
+* [**/projects-datasets**](https://datacatalog.bright.dtu.dk/api/docs#/projects-datasets)

docs/Dataset/Add_Dataset.md

@@ -127,6 +127,11 @@ This section includes questions about compliance and data sharing:
 → **BRIGHT-visible**: READ-ONLY access for project and dataset metadata is granted to all BRIGHT employees. Access to files in Microsoft Azure Storage account remains restricted to project members and collaborators.
 ```
 
+----------------------------
 
+## API Availability
 
+Some of the fields used when creating a DMP can also be set programmatically using our **FastAPI**. For more details, see the following endpoints in our API Reference:
+
+* [**/dmp**](https://datacatalog.bright.dtu.dk/api/docs#/dmp)
 

docs/Dataset/Manage_Datasets.md

@@ -111,6 +111,13 @@ The tab displays a table view with:
 To grant or remove permissions for a user, simply click or unclick the options available. Changes apply immediately.
 ```
 
+----------------------------
+
+## API Availability
+
+The actions described above can also be performed programmatically using our **FastAPI**. For more details, see the following endpoints in our API Reference:
 
+* [**/projects**](https://datacatalog.bright.dtu.dk/api/docs#/projects)
+* [**/policies/projects**](https://datacatalog.bright.dtu.dk/api/docs#/policies)
 
 

docs/Project/Create_Project.md

@@ -46,4 +46,8 @@ To make your search more precise, try combining **multiple filters** at once.
 ```
 ----------------------------
 
-<br/>
+## API Availability
+
+The search can also be performed programmatically using our **FastAPI**. For more details, see the following endpoint in our API Reference:
+
+* [**/search**](https://datacatalog.bright.dtu.dk/api/docs#/search/search_search_post)