DEGA-111 - NBP Clustering #223
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* Add hex tile clustering * initial set up * Add niche clustering example notebook * adding gdf_niche/gdf_hex clustergram visual * adding niche labels as meta_row for clustergram * replacing percentages with proportions in calc_nbp * fixing function name * fixing return for prepare_nbhd_for_clustering * rearranging notebook * making prepare_nbhd_for_clustering inclusive of other nbhd types * using inclusive gdf names * clustergram transposed * visualizing in landscape viewer: initial setup * moving imports to the start
…hub.com:broadinstitute/celldega into DEGA-111-NBP-Cell-Cluster-Type-Niche-Clustering
…-to-widgets feat: add entity support to widgets
…andscape-and-clustergram fixing reverted functionalities after merging from main
…o DEGA-111-dev-codex
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@cornhundred, in this PR:
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…o DEGA-111-dev-codex
…o DEGA-111-dev-codex
…o DEGA-111-dev-codex
…o DEGA-111-dev-codex
…o DEGA-111-dev-codex
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In this PR:
Added _dissolve_by_category() method to melt a GeoDataFrame by a specified column
Updated calc_nbp() API in the nbhd module
Modified generate_hex_grid() API to accept diameter instead of radius
Filtered out hexagon tiles with fewer than 5 cells
Enabled creation of a clustergram for neighborhood niches and cell clusters/types in niche_clustering.ipynb
Enabled syncing landscape–clustergram widget view with the hexagonal neighborhood layer using obs_store
Updated relevant Pytests