Issues

• ClickHouse Sling connection uses MySQL database name instead of clickhouse_database_name

  cBioPortal/cbioportal-core#194 · Filter by author amirinenik opened on Oct 1, 2026

• Merge cbioportal-core back into cbioportal repository

  cleanupClickHouse migrationquestion
  cBioPortal/cbioportal-core#136 · Filter by author n1zea144 opened on Apr 3, 2026
  

• Validator doesn't look for duplicated entries in timeline data

  cBioPortal/cbioportal-core#128 · Filter by author oplantalech opened on Mar 26, 2026
  

• cbioportalImporter.py remove-samples command leaves "sample-less" patients

  bugquestion
  cBioPortal/cbioportal-core#113 · Filter by author sheridancbio opened on Feb 23, 2026

• Fail Import When Data Genome Build Does Not Match Study Genome Build

  cBioPortal/cbioportal-core#99 · Filter by author forus opened on Nov 14, 2025
  1

  

• Bug Report: NCBI Build Hardcoded to GRCh37 in Validator for Incremental Upload

  cBioPortal/cbioportal-core#98 · Filter by author forus opened on Nov 12, 2025

• How to import from local to external cBioPortal server?

  cBioPortal/cbioportal-core#96 · Filter by author mavwolverine opened on Oct 15, 2025

• Add Warning/Error When Clinical Attribute Values Are Truncated Due to Length Limits

  cBioPortal/cbioportal-core#87 · Filter by author forus opened on Jun 11, 2025
  1

• Patient id defined in the clinical sample file is not present in the clinical patient file

  cBioPortal/cbioportal-core#86 · Filter by author forus opened on Jun 7, 2025

• Incremental Upload Process is Confusing When Multiple Files of the Same Data Type Are Involved

  cBioPortal/cbioportal-core#79 · Filter by author forus opened on Apr 8, 2025

• Cannot pass API tokens to data import scripts

  cBioPortal/cbioportal-core#69 · Filter by author mjugl opened on Dec 12, 2024
  1

• Introduce a step to update study metadata

  enhancement
  cBioPortal/cbioportal-core#67 · Filter by author forus opened on Nov 21, 2024
  7

  

• Inconsistent Handling of 5'Flank Mutation Type with Custom Filtered Mutations

  cBioPortal/cbioportal-core#65 · Filter by author forus opened on Nov 1, 2024

• Docker installation - import studies example not working (google group)

  bug
  cBioPortal/cbioportal-core#61 · Filter by author n1zea144 opened on Oct 8, 2024
  1

• Remove ImportDrugs class

  cBioPortal/cbioportal-core#54 · Filter by author forus opened on Jul 12, 2024

• Move relevant docs from cbioportal to cbioportal-core

  cBioPortal/cbioportal-core#53 · Filter by author forus opened on Jun 28, 2024
  1

• Build and release executable jar automatically

  cBioPortal/cbioportal-core#52 · Filter by author dippindots opened on Jun 27, 2024

• Remove unused the ImportSif code

  cleanup
  cBioPortal/cbioportal-core#49 · Filter by author forus opened on Jun 21, 2024

• Move integration tests from cbioportal to cbioportal-core

  cBioPortal/cbioportal-core#36 · Filter by author forus opened on May 1, 2024

• Improve code by making caching behaviour less invasive

  cBioPortal/cbioportal-core#35 · Filter by author forus opened on Apr 30, 2024

• https://www.cbioportal.org/webservice.do?cmd=getCancerStudies not working

  cBioPortal/cbioportal-core#33 · Filter by author daianatoader opened on Apr 22, 2024
  1

• Remove support of MIXED_ATTRIBUTES datatype of clinical files

  cBioPortal/cbioportal-core#31 · Filter by author forus opened on Apr 3, 2024

• Integration test needed to test cbioportal-core import process

  cBioPortal/cbioportal-core#72 · Filter by author haynescd opened on Mar 14, 2024

• Add GitHub Actions to automatically Release Cbioportal-core

  cBioPortal/cbioportal-core#73 · Filter by author haynescd opened on Mar 14, 2024
  1

• Official Documentation Needs to Be Updated

  bug
  cBioPortal/cbioportal-core#18 · Filter by author 7xuanlu opened on Mar 1, 2024
  1