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Where can we access the pretrained mm10 model for Akita HiC prediction?

Status: Open.

#218 In calico/basenji;

· ananyapavuluri opened on Sep 26, 2025

Installation woes (Cuda, as always, is being a pain)

Status: Open.

#217 In calico/basenji;

· mmtrebuchet opened on Aug 22, 2025

Nan values and -inf during training with Akita for HiC prediction

Status: Open.

#215 In calico/basenji;

· ananyapavuluri opened on Jun 11, 2025

Poor training performance on specific cell type Hi-C data

Status: Open.

#213 In calico/basenji;

· Gemma-Zhang-326 opened on May 18, 2025

Error when running akita_train.py

Status: Open.

#205 In calico/basenji;

· xiaoxiao6630 opened on Feb 25, 2025

How to change older params.txt in manuscripts/genome_research2018 to params.json

Status: Open.

#204 In calico/basenji;

· biginfor opened on Dec 24, 2024

Plotting Error in basenji_test.py

Status: Open.

#203 In calico/basenji;

· ratheraarif opened on Dec 9, 2024

Using the same architecture and training parameters in pytorch, the model fails to converge.

Status: Open.

#201 In calico/basenji;

· bioczsun opened on Oct 31, 2024

akita train error

Status: Open.

#200 In calico/basenji;

· guandailu opened on Jul 31, 2024

AssertionError, Basenji_test.py 'Conv1D' object has no attribute 'input_shape'

Status: Open.

#199 In calico/basenji;

· PouriaAzadehR opened on Jun 5, 2024

Question of expected data

Status: Open.

#198 In calico/basenji;

· seraphimangel77 opened on Jun 3, 2024

basenji_read overflow

Status: Open.

#196 In calico/basenji;

· ElArquitectorgo opened on May 20, 2024