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Scheduled monthly dependency update for October #443

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Scheduled monthly dependency update for October #443

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b8c5be2
Pin cython to latest version 3.1.4
pyup-bot Oct 1, 2025
c0b0429
Pin numpy to latest version 2.3.3
pyup-bot Oct 1, 2025
2785d9a
Pin dask to latest version 2025.9.1
pyup-bot Oct 1, 2025
73d1888
Pin scipy to latest version 1.16.2
pyup-bot Oct 1, 2025
046678b
Pin matplotlib to latest version 3.10.6
pyup-bot Oct 1, 2025
cdfbdd7
Pin seaborn to latest version 0.13.2
pyup-bot Oct 1, 2025
3dc6b69
Pin pandas to latest version 2.3.3
pyup-bot Oct 1, 2025
c933c3d
Pin protopunica to latest version 0.14.8.post2
pyup-bot Oct 1, 2025
e5bdaf0
Pin scikit-learn to latest version 1.7.2
pyup-bot Oct 1, 2025
a0ac187
Pin h5py to latest version 3.14.0
pyup-bot Oct 1, 2025
a95ef4f
Pin numexpr to latest version 2.13.1
pyup-bot Oct 1, 2025
5ee819b
Pin zarr to latest version 3.1.3
pyup-bot Oct 1, 2025
f498f77
Pin hmmlearn to latest version 0.3.3
pyup-bot Oct 1, 2025
f9d2b82
Pin ipython to latest version 9.6.0
pyup-bot Oct 1, 2025
a8098b2
Pin pyfasta to latest version 0.5.2
pyup-bot Oct 1, 2025
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6 changes: 3 additions & 3 deletions requirements_dev_base.txt
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Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
# required
cython
numpy
dask[array]
cython==3.1.4
numpy==2.3.3
dask[array]==2025.9.1
24 changes: 12 additions & 12 deletions requirements_dev_optional.txt
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Original file line number Diff line number Diff line change
@@ -1,13 +1,13 @@
# optional
scipy
matplotlib
seaborn
pandas
scikit-learn
h5py
numexpr
zarr
hmmlearn
protopunica
pyfasta
ipython
scipy==1.16.2
matplotlib==3.10.6
seaborn==0.13.2
pandas==2.3.3
scikit-learn==1.7.2
h5py==3.14.0
numexpr==2.13.1
zarr==3.1.3
hmmlearn==0.3.3
protopunica==0.14.8.post2
pyfasta==0.5.2
ipython==9.6.0
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